Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   J4N37_RS16010 Genome accession   NZ_CP071855
Coordinates   3355412..3356935 (-) Length   507 a.a.
NCBI ID   WP_252041370.1    Uniprot ID   -
Organism   Vibrio sp. SCSIO 43153     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3350412..3361935
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4N37_RS15985 (J4N37_15855) - 3350762..3351748 (+) 987 WP_252042147.1 serine/threonine protein kinase -
  J4N37_RS15990 (J4N37_15860) - 3351783..3352385 (+) 603 WP_005440776.1 thiol:disulfide interchange protein DsbA/DsbL -
  J4N37_RS15995 (J4N37_15865) - 3352427..3353305 (-) 879 WP_005440777.1 acyltransferase -
  J4N37_RS16000 (J4N37_15870) - 3353470..3354426 (+) 957 WP_252041368.1 DUF2860 domain-containing protein -
  J4N37_RS16005 (J4N37_15875) - 3354576..3355409 (+) 834 WP_005451004.1 GGDEF domain-containing protein -
  J4N37_RS16010 (J4N37_15880) comM 3355412..3356935 (-) 1524 WP_252041370.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  J4N37_RS16015 (J4N37_15885) ilvG 3357398..3359044 (+) 1647 WP_252041372.1 acetolactate synthase 2 catalytic subunit -
  J4N37_RS16020 (J4N37_15890) ilvM 3359056..3359340 (+) 285 WP_005440786.1 acetolactate synthase 2 small subunit -
  J4N37_RS16025 (J4N37_15895) ilvE 3359353..3360291 (+) 939 WP_009708024.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54989.16 Da        Isoelectric Point: 9.7259

>NTDB_id=548436 J4N37_RS16010 WP_252041370.1 3355412..3356935(-) (comM) [Vibrio sp. SCSIO 43153]
MGLAIIHSRASVGVQAPSVSVEVHISNGMPGFTLVGLPETTVKESKDRVRSAIVNSNFQFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASEQIATDKLKNYEFVGELALSGGLRAVKGVLPAALAANKKQRRLVVPHANGDQAALVGKEQHKSAQSL
LEVCAELCGQHQLNLYQTPKKKEIKKHGRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPEMNV
EEAMETASVASLTQSEINEHNWKTRPFRAPHHSSSMAALVGGGSLPRPGEISLAHNGLLFLDEMPEFDRKVLDSLREPLE
SGEIIISRAQGKTRFPARFQLVGALNPSPTGYYEGNQARTNPQAILRYLGRLSGPLLDRFDMSLEIPALPKGTLAEGGDR
GEPTAVVKQRVNQARDSMVQRSGKVNALLGSREIEAFCPLQKSDAEFLENALHRLGLSIRAYHRIIKVARTIADLEGSPQ
IERTHLAEALGYRAMDRLLKQLTAQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=548436 J4N37_RS16010 WP_252041370.1 3355412..3356935(-) (comM) [Vibrio sp. SCSIO 43153]
ATGGGGCTGGCAATCATTCATAGTCGAGCAAGTGTGGGTGTGCAAGCGCCGTCGGTAAGTGTGGAAGTCCACATCAGTAA
TGGGATGCCGGGCTTTACGCTAGTGGGTCTACCGGAAACGACAGTAAAAGAATCGAAAGATCGCGTCCGCAGTGCGATCG
TTAATTCCAACTTTCAATTCCCTGCCAAGCGAATTACGGTAAATTTAGCACCTGCGGATCTGCCCAAAGAAGGTGGACGC
TTCGATCTGCCGATTGCATTAGGGATTTTGGCAGCTTCAGAACAAATCGCGACAGATAAGCTCAAAAACTACGAATTTGT
TGGTGAATTAGCCCTTTCTGGCGGATTAAGAGCTGTAAAAGGCGTGCTGCCCGCTGCGTTGGCTGCGAACAAAAAGCAGC
GCCGTTTAGTGGTGCCTCATGCCAATGGTGATCAGGCGGCACTTGTCGGCAAAGAGCAGCACAAATCTGCTCAATCGCTA
TTGGAAGTTTGTGCTGAGTTGTGTGGCCAACATCAATTGAATTTGTATCAAACCCCGAAGAAAAAAGAGATCAAAAAGCA
CGGCCGAGATTTGCAAGACATCATCGGTCAACAGCAAGGCAAACGCGCTCTAGAGATCGCTGCAGCAGGCAATCACAATC
TACTGTTTCTCGGCCCTCCTGGTACGGGAAAAACCATGCTGGCATCACGCCTGTGTGACCTGTTACCTGAGATGAACGTT
GAAGAGGCAATGGAAACCGCTTCTGTGGCATCTCTGACTCAAAGTGAAATCAATGAGCACAACTGGAAGACGCGACCGTT
TCGCGCGCCGCACCATTCTAGCTCAATGGCAGCGCTCGTAGGAGGCGGCTCTTTGCCTAGGCCGGGTGAGATTTCATTAG
CGCACAATGGGTTACTGTTTCTCGACGAGATGCCAGAGTTTGACCGTAAGGTGCTCGACTCTTTACGTGAGCCATTGGAG
TCTGGTGAAATCATTATCTCTCGAGCGCAGGGTAAAACCCGTTTTCCGGCTCGTTTCCAATTGGTTGGTGCATTGAATCC
GAGCCCGACAGGGTACTACGAGGGCAATCAAGCTCGGACAAACCCGCAAGCGATACTGCGTTATCTTGGTCGGTTATCAG
GCCCGCTTCTGGACCGCTTTGATATGTCGTTAGAGATTCCCGCATTGCCAAAAGGTACACTTGCTGAAGGGGGCGATCGA
GGAGAGCCTACCGCTGTGGTTAAGCAAAGAGTCAATCAGGCCAGAGACAGCATGGTGCAACGCAGTGGTAAAGTGAACGC
GTTATTGGGTAGTCGAGAAATTGAAGCCTTTTGCCCGCTGCAAAAAAGCGACGCTGAGTTTTTAGAAAATGCGCTGCATC
GACTTGGATTATCGATTCGTGCTTACCACCGCATCATTAAAGTCGCGCGTACTATTGCTGATCTGGAAGGCTCACCGCAA
ATTGAGCGAACTCACTTGGCAGAAGCTTTGGGTTATCGAGCAATGGATAGGTTGCTCAAGCAGTTGACGGCGCAGGCAGT
ATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

97.239

100

0.972
  comM Vibrio cholerae strain A1552

84.813

100

0.848
  comM Haemophilus influenzae Rd KW20

65.68

100

0.657
  comM Glaesserella parasuis strain SC1401

63.922

100

0.643
  comM Legionella pneumophila str. Paris

49.398

98.225

0.485
  comM Legionella pneumophila strain ERS1305867

49.398

98.225

0.485
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.676

99.803

0.436