Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   J4N45_RS18515 Genome accession   NZ_CP071850
Coordinates   3886339..3887862 (-) Length   507 a.a.
NCBI ID   WP_252012968.1    Uniprot ID   -
Organism   Vibrio sp. SCSIO 43140     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3881339..3892862
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4N45_RS18490 (J4N45_18505) - 3881448..3882431 (+) 984 WP_252012964.1 serine/threonine protein kinase -
  J4N45_RS18495 (J4N45_18510) - 3882484..3883083 (+) 600 WP_042478078.1 thiol:disulfide interchange protein DsbA/DsbL -
  J4N45_RS18500 (J4N45_18515) - 3883149..3884033 (-) 885 WP_252012965.1 acyltransferase -
  J4N45_RS18505 (J4N45_18520) - 3884233..3885222 (+) 990 WP_252012966.1 DUF2860 domain-containing protein -
  J4N45_RS18510 (J4N45_18525) - 3885361..3886338 (+) 978 WP_252012967.1 DUF2860 family protein -
  J4N45_RS18515 (J4N45_18530) comM 3886339..3887862 (-) 1524 WP_252012968.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  J4N45_RS18520 (J4N45_18535) ilvG 3888342..3889988 (+) 1647 WP_252012969.1 acetolactate synthase 2 catalytic subunit -
  J4N45_RS18525 (J4N45_18540) ilvM 3889988..3890269 (+) 282 WP_042478104.1 acetolactate synthase 2 small subunit -
  J4N45_RS18530 (J4N45_18545) - 3890284..3891225 (+) 942 WP_128649116.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55089.29 Da        Isoelectric Point: 8.0868

>NTDB_id=548346 J4N45_RS18515 WP_252012968.1 3886339..3887862(-) (comM) [Vibrio sp. SCSIO 43140]
MGLSIIYSRASVGVEAPLVTVEVHISNGMPGFTLVGLPETTVKESKDRVRSAIINSRFEFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASDQLPHDKLLAHELVGELALSGELRSVKGVLPAALAANKAQRCLLVPEDNGDQAALVGKENHKSASSL
LDVCSYLMGQQTLSLVTSKARAPSCAKTRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPEMSE
EEAMETASVASLTQQEINESNWKTRPFRAPHHSSSMAALVGGGSIPRPGEISLAHNGLLFLDEMPEFERKVLDSLREPLE
SGEIIISRAQGKTRFPARFQLVGALNPSPTGYYEGNQARTNPQLILRYLSRLSGPLLDRFDMSIEIPSLPKGTLAEGGDR
GETTQVVKQRVLVARETMLSRSGKVNALLQSREIEHYCRLEKADAEFLENALHRLGLSIRAYHRIIKVARTIADLANEPN
IQRAHIAEALGYRAMDRLLKQLTAQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=548346 J4N45_RS18515 WP_252012968.1 3886339..3887862(-) (comM) [Vibrio sp. SCSIO 43140]
ATGGGATTATCTATTATTTATAGCCGTGCCAGTGTTGGTGTGGAGGCACCTTTGGTGACGGTGGAAGTGCACATCAGTAA
TGGCATGCCAGGCTTTACACTGGTAGGACTTCCCGAGACAACCGTAAAAGAATCTAAGGACAGAGTTCGCAGTGCCATCA
TCAACTCTCGCTTCGAATTTCCGGCCAAAAGAATTACGGTTAATCTCGCCCCTGCGGATCTGCCTAAAGAGGGAGGGCGG
TTTGATTTACCGATAGCGTTAGGAATACTCGCCGCGTCCGACCAACTGCCACACGATAAGCTACTGGCACATGAGCTGGT
CGGTGAACTGGCGCTGTCAGGGGAGCTTAGATCGGTGAAGGGCGTGCTACCTGCCGCGCTCGCCGCTAACAAAGCGCAGC
GCTGCTTGCTTGTACCAGAAGACAATGGCGACCAAGCCGCGCTCGTGGGCAAAGAGAACCACAAGTCTGCCTCCTCACTA
TTGGATGTGTGCAGTTATCTGATGGGGCAGCAGACGCTCTCTTTGGTGACCAGTAAAGCCCGAGCGCCATCTTGCGCTAA
AACGCGCGATCTTCAAGATATTATTGGTCAGCAACAGGGCAAACGTGCCTTGGAGATCGCAGCGGCAGGTAATCATAATC
TATTGTTCTTGGGACCACCGGGCACCGGCAAGACAATGCTTGCCTCTCGCCTGTGTGACTTGCTGCCGGAGATGAGTGAA
GAAGAAGCGATGGAAACCGCCTCTGTCGCTTCGTTAACTCAGCAGGAGATCAACGAGAGCAACTGGAAAACCAGACCCTT
TCGAGCGCCCCATCATTCCAGTTCAATGGCCGCACTGGTTGGTGGCGGATCTATTCCAAGACCGGGAGAAATCTCTCTGG
CGCACAACGGGCTGCTTTTCTTAGACGAGATGCCGGAGTTTGAGCGTAAAGTGCTGGATTCACTTCGTGAGCCACTAGAG
TCTGGTGAGATCATCATTTCTCGCGCCCAAGGAAAAACGCGTTTTCCAGCGAGATTTCAGCTTGTTGGTGCACTAAATCC
GAGCCCTACAGGCTACTACGAAGGCAATCAAGCCAGAACCAATCCGCAGCTCATTCTTCGTTATCTGAGCCGATTATCCG
GACCGCTGCTGGACAGGTTTGATATGTCTATCGAGATACCTTCACTGCCCAAAGGGACCTTGGCGGAAGGTGGCGATAGG
GGAGAAACCACGCAAGTGGTTAAGCAGCGTGTGTTGGTTGCCAGAGAGACCATGCTATCGCGAAGTGGTAAAGTGAATGC
CCTATTGCAAAGTCGTGAAATTGAGCATTACTGCCGATTAGAAAAAGCCGATGCCGAGTTTCTGGAGAATGCTCTGCATC
GACTCGGTCTATCGATACGCGCGTATCATCGTATTATCAAGGTGGCGCGAACCATTGCTGACCTTGCCAATGAGCCCAAC
ATCCAGAGAGCTCATATTGCAGAGGCGCTAGGCTACCGCGCGATGGACAGATTGCTCAAGCAGCTTACTGCGCAAGCGGT
GTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

85.602

100

0.856
  comM Vibrio campbellii strain DS40M4

84.813

100

0.848
  comM Haemophilus influenzae Rd KW20

66.667

100

0.667
  comM Glaesserella parasuis strain SC1401

64.902

100

0.653
  comM Legionella pneumophila str. Paris

48.79

97.83

0.477
  comM Legionella pneumophila strain ERS1305867

48.79

97.83

0.477
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.135

99.211

0.438