Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   J4N45_RS16165 Genome accession   NZ_CP071850
Coordinates   3388263..3388802 (-) Length   179 a.a.
NCBI ID   WP_042473381.1    Uniprot ID   A0A090RVR1
Organism   Vibrio sp. SCSIO 43140     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3383263..3393802
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4N45_RS16150 (J4N45_16160) - 3384206..3384358 (+) 153 WP_234495176.1 hypothetical protein -
  J4N45_RS16155 (J4N45_16165) bcsG 3384362..3385984 (+) 1623 WP_252012512.1 cellulose biosynthesis protein BcsG -
  J4N45_RS16160 (J4N45_16170) csrD 3386080..3388071 (-) 1992 WP_252012513.1 RNase E specificity factor CsrD -
  J4N45_RS16165 (J4N45_16175) ssb 3388263..3388802 (-) 540 WP_042473381.1 single-stranded DNA-binding protein Machinery gene
  J4N45_RS16170 (J4N45_16180) qstR 3389082..3389738 (+) 657 WP_128648945.1 LuxR C-terminal-related transcriptional regulator Regulator
  J4N45_RS16175 (J4N45_16185) galU 3389921..3390790 (+) 870 WP_042473378.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  J4N45_RS16180 (J4N45_16190) uvrA 3390940..3393768 (+) 2829 WP_252012514.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 19787.01 Da        Isoelectric Point: 5.2358

>NTDB_id=548334 J4N45_RS16165 WP_042473381.1 3388263..3388802(-) (ssb) [Vibrio sp. SCSIO 43140]
MASRGVNKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQNGQDRYTTEVVVQGFNGVMQMLGGRQGGGAPMQGGMNQGGMQQQAPQQQGWGQPQQPAVQQPAQQKPA
QQQPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=548334 J4N45_RS16165 WP_042473381.1 3388263..3388802(-) (ssb) [Vibrio sp. SCSIO 43140]
ATGGCAAGCCGTGGAGTAAACAAAGTCATTCTAGTGGGTAACTTAGGTAACGACCCAGAAATTCGTTACATGCCAAACGG
CGGTGCCGTGGCGAATATTACAATCGCGACTTCTGAATCGTGGCGTGATAAGGCGACTGGCGAACAGCGCGAAAAAACTG
AGTGGCACCGTGTTGCACTATTCGGCAAGCTGGCAGAAGTGGCTGGCGAGTACTTGAGAAAAGGTTCTCAAGTGTACATC
GAAGGTCAACTACAGACTCGTAAGTGGCAAGACCAAAATGGTCAAGACCGCTACACAACAGAGGTTGTGGTTCAAGGCTT
TAACGGTGTTATGCAGATGCTAGGCGGCCGTCAAGGCGGCGGTGCTCCAATGCAGGGTGGTATGAACCAAGGCGGTATGC
AGCAGCAAGCTCCACAACAACAAGGTTGGGGTCAGCCACAGCAGCCTGCAGTTCAGCAGCCAGCACAGCAAAAACCTGCT
CAACAGCAGCCACAATACAATGAACCACCAATGGATTTCGACGACGACATCCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A090RVR1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

81.522

100

0.838
  ssb Glaesserella parasuis strain SC1401

58.947

100

0.626
  ssb Neisseria meningitidis MC58

47.253

100

0.48
  ssb Neisseria gonorrhoeae MS11

46.629

99.441

0.464