Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   J4N45_RS16170 Genome accession   NZ_CP071850
Coordinates   3389082..3389738 (+) Length   218 a.a.
NCBI ID   WP_128648945.1    Uniprot ID   -
Organism   Vibrio sp. SCSIO 43140     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3384082..3394738
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4N45_RS16150 (J4N45_16160) - 3384206..3384358 (+) 153 WP_234495176.1 hypothetical protein -
  J4N45_RS16155 (J4N45_16165) bcsG 3384362..3385984 (+) 1623 WP_252012512.1 cellulose biosynthesis protein BcsG -
  J4N45_RS16160 (J4N45_16170) csrD 3386080..3388071 (-) 1992 WP_252012513.1 RNase E specificity factor CsrD -
  J4N45_RS16165 (J4N45_16175) ssb 3388263..3388802 (-) 540 WP_042473381.1 single-stranded DNA-binding protein Machinery gene
  J4N45_RS16170 (J4N45_16180) qstR 3389082..3389738 (+) 657 WP_128648945.1 LuxR C-terminal-related transcriptional regulator Regulator
  J4N45_RS16175 (J4N45_16185) galU 3389921..3390790 (+) 870 WP_042473378.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  J4N45_RS16180 (J4N45_16190) uvrA 3390940..3393768 (+) 2829 WP_252012514.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 24961.56 Da        Isoelectric Point: 7.9591

>NTDB_id=548335 J4N45_RS16170 WP_128648945.1 3389082..3389738(+) (qstR) [Vibrio sp. SCSIO 43140]
MIMRKNSYKRTIQHVSFGKDPEVTQRVSELSNLCINSIETITPNDLLNVASGPRNRILLFDYEESLDLFKQVLNLPLASK
NFETILINVPHRLTTEEILKYGHIKGLFYTHEDAGKITYGFGEIINGKNWLPRDVASQLIHHYRYVVSANTSTTVVDLTS
REIEILRCLQSGASNLEISEDLYITESTVKSHLYQVFRKLSVKNRLQAIAWANQHLLS

Nucleotide


Download         Length: 657 bp        

>NTDB_id=548335 J4N45_RS16170 WP_128648945.1 3389082..3389738(+) (qstR) [Vibrio sp. SCSIO 43140]
ATGATTATGAGAAAAAATAGCTATAAGCGAACCATACAACACGTCAGTTTTGGGAAAGATCCAGAAGTCACACAGCGCGT
AAGTGAGCTGTCCAATCTATGCATCAACAGTATCGAAACCATTACTCCGAACGACTTGCTCAATGTCGCGTCGGGACCCA
GAAATCGCATCCTTCTTTTTGATTATGAAGAATCGCTAGACCTATTCAAACAAGTGCTAAATCTCCCCCTTGCCAGCAAA
AATTTTGAGACGATTCTCATCAACGTTCCTCACAGGTTAACCACTGAAGAGATTCTCAAATATGGTCACATCAAAGGGCT
TTTCTACACCCATGAGGATGCAGGTAAGATTACCTATGGGTTTGGCGAGATCATCAATGGAAAAAACTGGTTACCGCGAG
ACGTGGCGAGCCAACTTATACACCATTATCGCTATGTCGTTTCAGCGAATACCTCTACCACAGTGGTAGATTTAACCTCA
CGAGAGATAGAAATATTACGCTGCTTGCAATCAGGTGCGAGTAATCTCGAAATCTCAGAAGATTTATACATAACGGAGTC
GACGGTAAAGTCTCATTTGTATCAAGTTTTTAGAAAGCTATCGGTCAAAAACAGGCTCCAAGCTATTGCCTGGGCAAACC
AACACTTGCTGTCATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(158-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio cholerae strain A1552

50.459

100

0.505
  qstR Vibrio parahaemolyticus RIMD 2210633

49.074

99.083

0.486
  qstR Vibrio campbellii strain DS40M4

49.074

99.083

0.486