Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   J4N39_RS00060 Genome accession   NZ_CP071848
Coordinates   15235..16758 (+) Length   507 a.a.
NCBI ID   WP_252020860.1    Uniprot ID   -
Organism   Vibrio sp. SCSIO 43136     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 10235..21758
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4N39_RS00045 (J4N39_00045) - 11924..12859 (-) 936 WP_252020854.1 branched-chain amino acid transaminase -
  J4N39_RS00050 (J4N39_00050) ilvM 12875..13159 (-) 285 WP_252020856.1 acetolactate synthase 2 small subunit -
  J4N39_RS00055 (J4N39_00055) ilvG 13159..14805 (-) 1647 WP_252020858.1 acetolactate synthase 2 catalytic subunit -
  J4N39_RS00060 (J4N39_00060) comM 15235..16758 (+) 1524 WP_252020860.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  J4N39_RS00065 (J4N39_00065) - 16755..17735 (-) 981 WP_252020862.1 DUF2860 family protein -
  J4N39_RS00070 (J4N39_00070) - 17926..18804 (+) 879 WP_252020864.1 acyltransferase -
  J4N39_RS00075 (J4N39_00075) - 18849..19448 (-) 600 WP_252020866.1 thiol:disulfide interchange protein DsbA/DsbL -
  J4N39_RS00080 (J4N39_00080) - 19479..20465 (-) 987 WP_252023781.1 serine/threonine protein kinase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54997.16 Da        Isoelectric Point: 8.0216

>NTDB_id=548270 J4N39_RS00060 WP_252020860.1 15235..16758(+) (comM) [Vibrio sp. SCSIO 43136]
MGLAIINSRACIGVEAPDVTVEVHISNGMPGFALVGLPETTVKESRDRVRSAIVNSGFEFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASEQLPNTQLHNYEFIGELALSGEMRRVKGVLPAALAAKQRKRCLVVPDSNGDQAALVSSERHKSAPSL
VAVCAEICGQTPLGLNQTEQAEHQPSDSRCLQDIIGQQQGKRALEIAAAGHHNILFMGPPGTGKTMLASRLRDLLPEMDE
AEAMETAAVASLTEQEITQYNWKRRPFRSPHHSSSMAALVGGGSVPKPGEISLAHNGLLFLDEMPEFERKVLDSLREPLE
SGEIIISRAAGKTRFPARFQLVGALNPSPTGYYEGNQARVNPQVILRYLNRLSGPLLDRFDMSLEIPALPKGTLAEGGDR
GETTSVVKQRVLVAREQMLSRSGKVNALLGSRELDQVCKLEKSDAQFLESALHRLGLSIRAYHRIIKVARTIADLEASPV
ITRAHLAEALGYRAMDRLLRQLTAQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=548270 J4N39_RS00060 WP_252020860.1 15235..16758(+) (comM) [Vibrio sp. SCSIO 43136]
ATGGGCTTAGCCATTATCAACAGTCGAGCGTGTATCGGCGTAGAGGCACCGGACGTGACTGTCGAGGTGCATATCAGCAA
TGGAATGCCGGGATTTGCCTTGGTTGGTTTACCGGAAACGACGGTTAAAGAGTCAAGAGACCGAGTACGCAGTGCCATCG
TCAATTCAGGGTTTGAGTTTCCGGCGAAAAGGATCACTGTCAATTTGGCTCCGGCGGATCTGCCTAAGGAAGGTGGACGG
TTTGACCTGCCAATTGCCCTCGGGATCTTGGCGGCATCAGAGCAGTTACCGAACACGCAGCTGCATAACTATGAGTTTAT
TGGTGAGCTGGCCCTGTCGGGGGAAATGCGTCGAGTTAAGGGGGTATTGCCTGCCGCCTTAGCTGCCAAACAGCGTAAAC
GCTGTTTGGTTGTGCCTGATAGCAATGGTGATCAGGCGGCTTTGGTAAGTAGTGAGCGACATAAATCGGCTCCCTCTTTA
GTGGCGGTGTGCGCTGAGATTTGTGGTCAAACCCCACTTGGGCTCAATCAAACTGAGCAAGCCGAACATCAGCCGAGCGA
TTCTCGCTGCTTGCAAGATATTATTGGCCAGCAGCAGGGCAAACGTGCGTTAGAAATTGCTGCGGCCGGCCACCATAATA
TTTTGTTTATGGGGCCTCCAGGTACTGGAAAAACCATGTTGGCCTCACGACTGCGTGACTTGCTGCCTGAGATGGATGAG
GCAGAAGCGATGGAAACAGCGGCCGTCGCCTCATTGACTGAGCAAGAGATCACCCAATACAACTGGAAACGTCGCCCGTT
TCGTTCACCACACCACTCCAGCTCCATGGCAGCGCTGGTGGGTGGAGGATCTGTACCCAAGCCGGGCGAGATCTCTCTGG
CACATAATGGATTACTGTTTTTAGATGAAATGCCGGAATTTGAGCGCAAAGTACTCGACTCATTAAGAGAACCGCTGGAA
TCGGGAGAGATCATCATTTCTCGAGCGGCGGGGAAAACCCGCTTCCCAGCTAGATTTCAGTTGGTCGGGGCACTCAACCC
AAGCCCTACGGGCTATTATGAGGGCAACCAAGCACGGGTAAATCCTCAAGTGATTCTGCGCTACCTGAATCGATTATCAG
GACCACTGCTGGATCGTTTTGATATGTCGCTCGAAATCCCGGCTTTGCCAAAAGGAACCTTGGCCGAAGGAGGTGATAGA
GGGGAAACCACATCGGTTGTAAAACAGCGGGTTCTCGTCGCACGCGAACAGATGCTCAGCCGAAGTGGCAAAGTTAACGC
CCTGCTTGGTAGTCGAGAGTTGGATCAAGTGTGTAAGCTGGAAAAGAGCGATGCTCAATTTTTAGAATCTGCATTGCATC
GCTTGGGGTTATCGATTCGGGCGTATCACCGCATCATTAAGGTAGCGAGAACCATAGCTGACCTTGAAGCGAGCCCTGTG
ATTACCCGAGCGCATCTTGCCGAAGCGCTCGGGTATCGAGCTATGGATAGGTTGTTACGGCAATTGACCGCGCAAGCGGT
TTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

81.854

100

0.819
  comM Vibrio campbellii strain DS40M4

81.46

100

0.815
  comM Haemophilus influenzae Rd KW20

62.722

100

0.627
  comM Glaesserella parasuis strain SC1401

62.353

100

0.627
  comM Legionella pneumophila str. Paris

49.307

99.606

0.491
  comM Legionella pneumophila strain ERS1305867

49.307

99.606

0.491
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.222

100

0.434