Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsS   Type   Regulator
Locus tag   J4N41_RS18685 Genome accession   NZ_CP071846
Coordinates   693930..695987 (+) Length   685 a.a.
NCBI ID   WP_252037488.1    Uniprot ID   -
Organism   Vibrio sp. SCSIO 43139     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 688930..700987
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4N41_RS18675 (J4N41_18595) - 689629..690759 (+) 1131 WP_252037484.1 exonuclease SbcCD subunit D -
  J4N41_RS18680 (J4N41_18600) - 690769..693810 (+) 3042 WP_252037486.1 SMC family ATPase -
  J4N41_RS18685 (J4N41_18605) cqsS 693930..695987 (+) 2058 WP_252037488.1 hybrid sensor histidine kinase/response regulator Regulator
  J4N41_RS18690 (J4N41_18610) cqsA 696025..697206 (-) 1182 WP_239864149.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  J4N41_RS18695 (J4N41_18615) - 697424..698392 (-) 969 WP_239864148.1 TDT family transporter -
  J4N41_RS18700 (J4N41_18620) clcA 698511..699911 (-) 1401 WP_252037489.1 H(+)/Cl(-) exchange transporter ClcA -

Sequence

Protein


Download         Length: 685 a.a.        Molecular weight: 78869.34 Da        Isoelectric Point: 4.9707

>NTDB_id=548266 J4N41_RS18685 WP_252037488.1 693930..695987(+) (cqsS) [Vibrio sp. SCSIO 43139]
MTAVLESVRKVYQYAEPNLTLVGWMGLLGFPTYYYVWSYLFPQPYENLALRLLCSALFAVIAFRHSLPKYLQKYMPQYYL
VSIAFCLPCFFSFMMFMNQWSTIWAMSFMASIFLHILLVHQTRLMLLQAVFSLLIAFFAVYGFDFSYAIEQVVWPYIPIF
LFTYVFGNLFYFRNQVEHESKVSIAKSFGAGIAHEMRNPLSALKASFDVLSSLLPDDKSKYSDFYPMSHQELTIAREVLS
DADEVIQYGNETIDLLLTSIDENRVSTSTFKKQSLKRVIEDSLASFAYKSSKDKQSVQFHCEEDAAFFGSDTLIKYALYN
LLKNAFYYQSGEDFRINIELRCYEKYNVMTFRDNGVGIAPDVLENIFKDFYTFGKSGSYGLGLPFCRKVMQAVGGKISCQ
SVLNEWTEFTLTFPKYQSEKVDHIKLDLMKSKSALYVGDTSVISRLLNEQSFYKGFTLNTVDIELANSREEYEFEYDLIF
IDLDAVITSPNQLAALENKLHFTEARIVFLYDENNRYHNDIERHLTIYPVEKHRMLLEPGRVLDELFFESPEPDRNLLPR
KEVRVGKTIVIADDNHSLRTYTSILLEQQGFEVIQAQNGQEVLDKLQNNLVDLVLMDIEMPQLNGLDAANAIRSSDREYA
NVPILGHTGDSTSGAIDKIHESGMNDYIIKPAGTEVLLDKISNWI

Nucleotide


Download         Length: 2058 bp        

>NTDB_id=548266 J4N41_RS18685 WP_252037488.1 693930..695987(+) (cqsS) [Vibrio sp. SCSIO 43139]
ATGACAGCAGTTCTGGAATCAGTACGTAAGGTATACCAGTATGCGGAGCCCAACTTAACGCTAGTGGGATGGATGGGGCT
GCTTGGCTTTCCGACCTATTACTATGTCTGGTCGTATCTATTTCCACAACCCTATGAAAACCTTGCTTTAAGATTACTTT
GCTCCGCATTGTTTGCGGTGATCGCGTTTAGGCACTCGTTGCCTAAGTATCTGCAAAAGTACATGCCTCAATACTATTTA
GTATCTATCGCGTTTTGTTTGCCTTGTTTCTTTAGTTTCATGATGTTTATGAATCAGTGGTCTACGATATGGGCGATGTC
TTTTATGGCGTCTATATTTCTCCATATCTTATTGGTTCACCAGACACGTTTGATGTTACTGCAAGCCGTATTTTCACTGT
TGATTGCGTTTTTCGCTGTTTATGGGTTCGATTTTTCTTACGCCATCGAACAGGTTGTTTGGCCTTACATACCCATTTTT
TTGTTTACTTATGTCTTTGGTAATTTGTTCTACTTCAGAAACCAAGTAGAGCATGAGAGTAAAGTATCAATCGCGAAATC
TTTTGGTGCTGGCATCGCGCACGAGATGCGAAACCCTCTCAGCGCTCTAAAGGCTTCTTTTGATGTTCTCAGCTCTCTTC
TACCTGATGATAAGTCAAAGTACTCAGACTTTTACCCAATGTCTCATCAGGAGCTGACTATCGCTAGAGAAGTATTGAGT
GATGCTGATGAGGTCATACAGTACGGTAACGAAACGATAGACTTATTGCTGACTTCAATTGATGAAAATCGCGTTTCTAC
CTCGACGTTCAAAAAGCAATCACTCAAGAGGGTAATAGAAGATTCTCTCGCTAGCTTTGCCTATAAAAGCTCTAAAGATA
AGCAATCTGTCCAGTTTCACTGTGAAGAGGACGCCGCTTTTTTTGGCAGTGATACCCTCATTAAATACGCATTATACAAC
TTGCTAAAAAATGCTTTTTACTATCAAAGTGGTGAAGATTTTAGAATCAATATCGAATTAAGGTGTTATGAAAAATACAA
TGTCATGACCTTTCGGGATAATGGTGTTGGTATTGCTCCGGATGTGCTAGAGAATATTTTTAAGGACTTCTATACCTTTG
GTAAATCTGGGAGCTATGGATTAGGTTTGCCGTTCTGTCGCAAAGTGATGCAAGCAGTTGGCGGTAAAATCAGCTGTCAG
TCGGTGCTTAATGAATGGACGGAGTTTACTTTGACCTTTCCAAAGTACCAATCAGAAAAAGTTGACCATATAAAATTGGA
TCTGATGAAATCTAAATCAGCACTCTATGTTGGTGATACCAGCGTGATTTCTCGTCTTCTTAATGAGCAATCATTCTATA
AAGGCTTCACACTCAATACTGTTGATATTGAGCTCGCCAATAGCCGGGAAGAATACGAGTTTGAATATGATCTCATCTTT
ATTGATTTGGATGCTGTGATTACGTCTCCAAATCAGTTGGCAGCTTTAGAAAATAAACTTCACTTTACCGAAGCACGGAT
TGTATTCCTATATGATGAAAACAACCGTTACCACAATGATATTGAAAGGCATTTAACTATTTACCCAGTAGAAAAACATC
GCATGTTGCTTGAGCCTGGTCGTGTCTTGGATGAACTCTTCTTTGAGTCACCAGAACCGGATAGAAATCTGCTCCCTCGT
AAAGAGGTACGTGTTGGTAAAACTATTGTTATTGCCGATGACAATCACTCTTTACGTACTTACACATCAATCCTGCTTGA
GCAGCAAGGATTTGAAGTGATACAGGCGCAAAATGGTCAAGAGGTGTTGGATAAACTACAGAACAATTTGGTTGATTTAG
TTCTTATGGACATTGAAATGCCACAACTCAATGGGCTAGATGCGGCCAATGCGATTCGCTCTTCTGATCGTGAATATGCC
AATGTTCCTATTTTAGGGCACACCGGGGATTCAACATCTGGCGCTATTGATAAAATCCATGAGTCGGGGATGAATGATTA
TATTATTAAGCCAGCGGGAACTGAGGTATTGCTAGATAAAATCTCTAATTGGATTTAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(314-415)

Response regulator receiver domain (Response_reg)

(569-681)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsS Vibrio cholerae strain A1552

53.275

100

0.534