Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   J4N43_RS15580 Genome accession   NZ_CP071842
Coordinates   3356312..3357835 (-) Length   507 a.a.
NCBI ID   WP_053350674.1    Uniprot ID   -
Organism   Vibrio sp. SCSIO 43009     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3351312..3362835
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4N43_RS15560 (J4N43_15470) - 3352599..3353585 (+) 987 WP_005379037.1 serine/threonine protein kinase -
  J4N43_RS15565 (J4N43_15475) - 3353620..3354222 (+) 603 WP_005379036.1 thiol:disulfide interchange protein DsbA/DsbL -
  J4N43_RS15570 (J4N43_15480) - 3354269..3355147 (-) 879 WP_005379035.1 acyltransferase -
  J4N43_RS15575 (J4N43_15485) - 3355297..3356253 (+) 957 WP_158159521.1 DUF2860 domain-containing protein -
  J4N43_RS15580 (J4N43_15490) comM 3356312..3357835 (-) 1524 WP_053350674.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  J4N43_RS15585 (J4N43_15495) ilvG 3358301..3359947 (+) 1647 WP_053350673.1 acetolactate synthase 2 catalytic subunit -
  J4N43_RS15590 (J4N43_15500) ilvM 3359959..3360243 (+) 285 WP_005378958.1 acetolactate synthase 2 small subunit -
  J4N43_RS15595 (J4N43_15505) ilvE 3360256..3361194 (+) 939 WP_025768922.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54993.07 Da        Isoelectric Point: 9.0584

>NTDB_id=548224 J4N43_RS15580 WP_053350674.1 3356312..3357835(-) (comM) [Vibrio sp. SCSIO 43009]
MGLAIIHSRASVGVQAPSVSVEVHISNGMPGFTLVGLPETTVKESKDRVRSAIINSNFQFPAKRITVNLAPADLPKEGGR
FDLPIALGVLAASEQIATDKLKNYEFVGELALSGGLRPVKGVLPAALEASKIQRHLVVPHVNGDQAALVGKEQHKSAQSL
LEVCAELCGQHRLNLFQTPKRKTIEKHGRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPEMSD
EEAMETASVASLTQSEINEHNWKSRPFRSPHHSSSMAALVGGGSVPRPGEISLAHNGLLFLDEMPEFDRKVLDSLREPLE
SGEIIISRAQGKTRFPARFQLVGALNPSPTGYYEGNQARTNPQAILRYLGRLSGPLLDRFDMSLEIPALPKGTLAEGGDR
GEPTAIVKARVSHARNNMLNRSGKVNALLGSREIEAFCPLHKSDAEFLETALHRLGLSIRAYHRIIKVARTIADLDGAEQ
IERTHLAEALGYRAMDRLLKQLTAQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=548224 J4N43_RS15580 WP_053350674.1 3356312..3357835(-) (comM) [Vibrio sp. SCSIO 43009]
ATGGGGCTGGCAATCATTCATAGTCGAGCAAGCGTCGGGGTGCAAGCGCCATCGGTTAGTGTAGAAGTTCATATCAGCAA
CGGCATGCCAGGGTTTACCTTAGTAGGCTTGCCAGAGACAACGGTAAAAGAGTCCAAAGATCGCGTACGCAGTGCGATCA
TTAATTCTAACTTTCAATTTCCTGCTAAGCGGATCACCGTGAACTTGGCTCCGGCAGATCTACCCAAGGAGGGAGGACGT
TTTGATCTTCCTATAGCATTGGGGGTTTTGGCCGCTTCGGAGCAAATCGCGACAGATAAGCTCAAAAACTACGAATTTGT
GGGTGAGTTAGCACTATCTGGTGGTCTGAGACCTGTAAAAGGTGTGCTGCCTGCTGCGCTGGAAGCCAGTAAGATTCAAC
GTCATTTGGTCGTCCCACATGTGAATGGCGATCAGGCGGCGCTGGTGGGGAAGGAACAACATAAATCGGCCCAATCATTA
CTGGAAGTATGTGCCGAGCTTTGTGGTCAACATCGACTGAATCTTTTTCAAACGCCTAAGCGAAAAACGATCGAAAAACA
TGGTCGAGACTTACAAGATATTATTGGCCAACAACAAGGTAAGCGAGCACTGGAGATTGCTGCCGCTGGAAACCACAACT
TACTTTTCCTTGGCCCGCCAGGTACTGGAAAAACGATGTTGGCTTCGCGTTTGTGTGACTTATTACCGGAAATGAGTGAC
GAAGAAGCAATGGAAACCGCTTCGGTGGCATCGTTGACTCAGAGTGAAATTAATGAGCATAACTGGAAGTCGCGTCCGTT
TCGTTCTCCGCACCATTCAAGTTCAATGGCGGCATTAGTCGGCGGTGGTTCGGTACCCAGACCAGGGGAGATCTCTTTAG
CCCACAACGGGTTATTGTTTCTCGATGAAATGCCCGAATTTGATCGTAAAGTTCTAGACTCGTTACGCGAACCGCTCGAA
TCTGGCGAGATCATTATCTCTCGAGCGCAAGGTAAAACACGCTTTCCGGCTCGCTTCCAATTAGTTGGAGCCTTGAACCC
AAGCCCGACAGGATATTACGAAGGCAATCAAGCGCGCACCAATCCACAAGCTATTTTGCGCTACCTTGGTCGATTATCTG
GACCACTGTTAGATCGCTTTGATATGTCTTTAGAAATCCCAGCTTTGCCCAAAGGGACATTAGCAGAAGGTGGTGATCGC
GGTGAGCCGACTGCTATCGTAAAAGCGCGTGTGAGCCATGCGCGTAACAATATGCTAAACCGCAGTGGTAAGGTCAATGC
ACTGCTAGGTAGTCGAGAAATTGAGGCGTTTTGTCCCTTGCACAAGAGTGATGCTGAGTTTCTTGAAACCGCTTTGCACC
GTTTAGGACTCTCGATTCGTGCGTATCATCGTATTATCAAAGTGGCGCGAACAATCGCCGATCTGGATGGGGCGGAGCAA
ATTGAACGAACGCACTTGGCTGAAGCTCTTGGGTATCGAGCGATGGACCGTTTGCTGAAACAGCTTACGGCGCAAGCGGT
ATAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

94.28

100

0.943
  comM Vibrio cholerae strain A1552

84.813

100

0.848
  comM Haemophilus influenzae Rd KW20

65.286

100

0.653
  comM Glaesserella parasuis strain SC1401

64.118

100

0.645
  comM Legionella pneumophila str. Paris

48.79

97.83

0.477
  comM Legionella pneumophila strain ERS1305867

48.79

97.83

0.477
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.281

99.803

0.432