Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   PSE7367_RS08940 Genome accession   NC_019701
Coordinates   2263312..2264460 (+) Length   382 a.a.
NCBI ID   WP_041699378.1    Uniprot ID   -
Organism   Pseudanabaena sp. PCC 7367     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2258312..2269460
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSE7367_RS08925 (Pse7367_1794) - 2258746..2259099 (+) 354 WP_015165037.1 rubredoxin -
  PSE7367_RS08930 (Pse7367_1795) - 2259174..2260241 (+) 1068 WP_156800368.1 photosynthesis system II assembly factor Ycf48 -
  PSE7367_RS08935 (Pse7367_1796) pilB/pilB1 2261173..2263200 (+) 2028 WP_015165039.1 GspE/PulE family protein Machinery gene
  PSE7367_RS08940 (Pse7367_1797) pilT 2263312..2264460 (+) 1149 WP_041699378.1 type IV pilus twitching motility protein PilT Machinery gene
  PSE7367_RS08945 (Pse7367_1798) - 2264574..2265776 (+) 1203 WP_015165041.1 type II secretion system F family protein -
  PSE7367_RS08950 (Pse7367_1799) miaA 2265720..2266676 (-) 957 WP_015165042.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA -
  PSE7367_RS08955 (Pse7367_1800) nth 2267119..2267721 (-) 603 Protein_1775 endonuclease III -
  PSE7367_RS08960 (Pse7367_1801) - 2268176..2268727 (+) 552 WP_015165044.1 hypothetical protein -
  PSE7367_RS21925 (Pse7367_1802) - 2269184..2269324 (-) 141 WP_015165045.1 hypothetical protein -

Sequence

Protein


Download         Length: 382 a.a.        Molecular weight: 42221.45 Da        Isoelectric Point: 6.8498

>NTDB_id=54821 PSE7367_RS08940 WP_041699378.1 2263312..2264460(+) (pilT) [Pseudanabaena sp. PCC 7367]
MDYIIEDLMEEVVERKGSDIHISAGLPPYIRISGHLTATDRDPLTPEETQRLVFAMLNNNQRKTFEQNWELDCSYGVKGL
ARFRVNVYKDRGTVAACLRVLSAKIPDMDDLKLPPIVRDLSEKPRGMVLVTGPTGSGKSTTLAAMIQTINKTRAEHILTV
EDPIEFVYESVKSVIHQRQVGEDTKSFAYALKSALREDPDVILVGEMRDLETIQLAVTAAETGHLVFGTLHTSSAAQTVD
RMVDVFPPAQQGQIRVQLSNSLVAVLSQTLIPRVNPKPGEFGRVMAQEIMIVTPAISNLIREGKTAQMYGFIQTGGKESM
QTLESKLADLYLDGSISFESAVSKTSRPEELHRLVGPNPANVVRKKGSYDIKKEIKSRSISG

Nucleotide


Download         Length: 1149 bp        

>NTDB_id=54821 PSE7367_RS08940 WP_041699378.1 2263312..2264460(+) (pilT) [Pseudanabaena sp. PCC 7367]
TTGGATTACATCATTGAAGATTTGATGGAAGAGGTAGTCGAGCGCAAGGGCTCGGATATTCATATTTCCGCTGGCCTACC
GCCCTATATTCGGATCAGTGGCCATCTAACTGCCACCGATCGTGATCCTCTTACCCCAGAAGAGACGCAGCGATTGGTCT
TTGCCATGCTCAACAACAATCAGCGTAAAACCTTTGAGCAAAACTGGGAGCTAGATTGCTCCTATGGGGTTAAGGGTCTA
GCCCGGTTTAGGGTTAATGTCTATAAGGATCGCGGTACCGTAGCGGCTTGTTTGCGGGTGCTGAGTGCCAAAATTCCTGA
CATGGATGATCTCAAACTACCGCCGATCGTCAGGGATTTATCAGAAAAGCCGAGGGGCATGGTACTGGTGACTGGGCCCA
CTGGATCGGGCAAGAGCACCACCCTGGCGGCAATGATTCAAACCATTAACAAAACCAGAGCTGAGCATATTCTCACCGTT
GAAGACCCGATCGAGTTTGTGTATGAATCGGTTAAGAGCGTGATTCACCAGCGCCAGGTAGGGGAAGACACCAAGAGTTT
TGCCTATGCGCTCAAAAGTGCATTGCGCGAAGATCCAGATGTGATTCTGGTTGGTGAAATGCGCGATCTAGAGACCATTC
AACTCGCGGTAACGGCAGCGGAAACAGGTCACCTGGTATTTGGCACCCTTCACACCAGTTCGGCGGCTCAAACCGTCGAT
CGGATGGTGGATGTGTTCCCACCTGCACAACAGGGACAAATTCGGGTGCAATTGTCCAACTCCCTGGTGGCAGTTTTGAG
TCAAACCCTGATTCCTCGGGTTAATCCCAAGCCTGGTGAATTTGGGCGGGTGATGGCGCAAGAGATTATGATCGTCACGC
CGGCTATTTCCAACCTGATTCGGGAAGGGAAAACGGCTCAAATGTATGGCTTTATTCAAACCGGTGGCAAAGAATCAATG
CAGACCCTCGAATCGAAGCTGGCAGACCTATACCTTGATGGTAGTATCAGCTTTGAATCGGCCGTGTCCAAGACTTCGCG
TCCAGAGGAGTTGCACCGTCTAGTTGGCCCCAATCCAGCTAATGTGGTGCGCAAAAAAGGCTCCTATGACATCAAGAAAG
AAATTAAATCTCGATCGATCAGTGGTTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Pseudomonas stutzeri DSM 10701

53.314

90.838

0.484
  pilT Pseudomonas aeruginosa PAK

53.314

90.838

0.484
  pilT Acinetobacter baumannii D1279779

52.738

90.838

0.479
  pilT Acinetobacter baumannii strain A118

52.738

90.838

0.479
  pilT Acinetobacter nosocomialis M2

52.738

90.838

0.479
  pilT Legionella pneumophila strain Lp02

52.464

90.314

0.474
  pilT Legionella pneumophila strain ERS1305867

52.464

90.314

0.474
  pilT Acinetobacter baylyi ADP1

52.161

90.838

0.474
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

49.858

91.885

0.458
  pilT Neisseria gonorrhoeae MS11

50.144

90.838

0.455
  pilT Neisseria meningitidis 8013

50.144

90.838

0.455
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

50

89.005

0.445
  pilT Vibrio cholerae strain A1552

50

89.005

0.445
  pilU Acinetobacter baylyi ADP1

38.983

92.67

0.361
  pilU Pseudomonas stutzeri DSM 10701

39.316

91.885

0.361

Multiple sequence alignment