Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   J4N40_RS02135 Genome accession   NZ_CP071840
Coordinates   449152..449691 (+) Length   179 a.a.
NCBI ID   WP_005381235.1    Uniprot ID   A0AAW9BS04
Organism   Vibrio sp. SCSIO 43097     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 444152..454691
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4N40_RS02120 (J4N40_02120) uvrA 444226..447048 (-) 2823 WP_005381241.1 excinuclease ABC subunit UvrA -
  J4N40_RS02125 (J4N40_02125) galU 447198..448070 (-) 873 WP_005381239.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  J4N40_RS02130 (J4N40_02130) qstR 448230..448874 (-) 645 WP_033907423.1 LuxR C-terminal-related transcriptional regulator Regulator
  J4N40_RS02135 (J4N40_02135) ssb 449152..449691 (+) 540 WP_005381235.1 single-stranded DNA-binding protein Machinery gene
  J4N40_RS02140 (J4N40_02140) csrD 449934..451943 (+) 2010 WP_171346111.1 RNase E specificity factor CsrD -
  J4N40_RS02145 (J4N40_02145) - 451955..453400 (+) 1446 WP_167415479.1 MSHA biogenesis protein MshI -
  J4N40_RS02150 (J4N40_02150) gspM 453397..454047 (+) 651 WP_005381197.1 type II secretion system protein GspM -
  J4N40_RS02155 (J4N40_02155) - 454040..454372 (+) 333 WP_005381196.1 hypothetical protein -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 19892.93 Da        Isoelectric Point: 4.9164

>NTDB_id=548150 J4N40_RS02135 WP_005381235.1 449152..449691(+) (ssb) [Vibrio sp. SCSIO 43097]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSDSWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGGAPMGGQQQQQGGWGQPQQPAQQQYNAPQQQQPQQQAPQ
QSQQQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=548150 J4N40_RS02135 WP_005381235.1 449152..449691(+) (ssb) [Vibrio sp. SCSIO 43097]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCGAATGG
CGGTGCAGTAGCAAACATTACTATTGCGACTTCTGATTCATGGCGTGATAAAGCGACTGGCGAACAGCGCGAAAAAACGG
AATGGCACCGTGTTGTGTTGTTCGGCAAACTTGCGGAAGTAGCAGGTGAGTACTTGCGTAAAGGCTCTCAAGTCTACATT
GAAGGGCAACTGCAAACTCGCAAATGGCAAGATCAAAGTGGTCAAGATCGCTACTCAACTGAAGTCGTTGTTCAAGGCTT
CAATGGTGTGATGCAAATGCTTGGCGGTCGTGCTCAAGGTGGCGGCGCACCTATGGGCGGTCAACAGCAGCAACAAGGTG
GATGGGGTCAGCCTCAACAGCCAGCTCAGCAGCAGTACAATGCGCCTCAGCAACAGCAACCACAACAACAGGCTCCGCAG
CAATCACAGCAGCAGTACAATGAGCCACCAATGGATTTTGACGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

80.328

100

0.821
  ssb Glaesserella parasuis strain SC1401

54.922

100

0.592
  ssb Neisseria meningitidis MC58

46.328

98.883

0.458
  ssb Neisseria gonorrhoeae MS11

46.328

98.883

0.458