Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   J4N40_RS02130 Genome accession   NZ_CP071840
Coordinates   448230..448874 (-) Length   214 a.a.
NCBI ID   WP_033907423.1    Uniprot ID   A0AAW9BJA8
Organism   Vibrio sp. SCSIO 43097     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 443230..453874
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4N40_RS02120 (J4N40_02120) uvrA 444226..447048 (-) 2823 WP_005381241.1 excinuclease ABC subunit UvrA -
  J4N40_RS02125 (J4N40_02125) galU 447198..448070 (-) 873 WP_005381239.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  J4N40_RS02130 (J4N40_02130) qstR 448230..448874 (-) 645 WP_033907423.1 LuxR C-terminal-related transcriptional regulator Regulator
  J4N40_RS02135 (J4N40_02135) ssb 449152..449691 (+) 540 WP_005381235.1 single-stranded DNA-binding protein Machinery gene
  J4N40_RS02140 (J4N40_02140) csrD 449934..451943 (+) 2010 WP_171346111.1 RNase E specificity factor CsrD -
  J4N40_RS02145 (J4N40_02145) - 451955..453400 (+) 1446 WP_167415479.1 MSHA biogenesis protein MshI -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24469.38 Da        Isoelectric Point: 9.7165

>NTDB_id=548149 J4N40_RS02130 WP_033907423.1 448230..448874(-) (qstR) [Vibrio sp. SCSIO 43097]
MRKSAYARKLFLISMEDNAQKKVAALEKYIDMSIPVISTEALMEAKPQHRNKILLIDFSEHKSLVQSIKNLPLVWKNFET
VVFNVPKRLTTDELLSFGQLKGVFYSEDTLEQIGEGLKGIVNGQNWLPRNVTSQLLHYYRNVINTHTAPATVDLTIRELQ
VLRCLQAGASNSQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLMS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=548149 J4N40_RS02130 WP_033907423.1 448230..448874(-) (qstR) [Vibrio sp. SCSIO 43097]
GTGAGAAAGTCGGCTTACGCAAGAAAGCTATTTCTGATCAGTATGGAAGATAATGCGCAAAAAAAAGTGGCGGCACTCGA
AAAGTACATTGATATGAGCATCCCGGTGATTTCAACCGAAGCACTCATGGAAGCCAAGCCACAACACCGTAATAAAATTC
TACTGATAGACTTCAGTGAACATAAATCACTTGTTCAATCGATCAAAAACTTGCCTCTTGTATGGAAAAACTTTGAAACC
GTTGTCTTCAACGTGCCTAAAAGACTAACCACAGATGAACTTCTTTCATTTGGTCAATTAAAAGGTGTGTTTTATTCTGA
AGATACGCTAGAGCAAATTGGAGAAGGGTTAAAAGGCATTGTTAACGGTCAAAACTGGCTGCCGCGTAATGTAACCAGTC
AACTTTTACACTATTACCGCAATGTCATTAATACTCATACTGCACCAGCTACGGTAGACCTAACCATTCGTGAGCTACAA
GTACTGCGTTGCCTACAAGCTGGCGCCTCGAACAGTCAGATGGCCGAAGAGTTATTCGTCAGTGAATTCACCATCAAATC
GCACTTGTATCAGATATTCAAAAAGCTATCCGTAAAGAACCGAGTACAGGCAATCGCCTGGGCAGACCAAAACTTAATGT
CGTGA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio parahaemolyticus RIMD 2210633

95.327

100

0.953
  qstR Vibrio campbellii strain DS40M4

89.252

100

0.893
  qstR Vibrio cholerae strain A1552

52.336

100

0.523