Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   MMOS7_RS03980 Genome accession   NZ_AP011528
Coordinates   733467..735407 (-) Length   646 a.a.
NCBI ID   WP_119720830.1    Uniprot ID   -
Organism   Methanococcus maripaludis OS7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 728467..740407
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MMOS7_RS03950 (MMOS7_07670) - 729994..730674 (+) 681 WP_013998913.1 ATP-binding protein -
  MMOS7_RS03955 (MMOS7_07680) - 730715..731347 (+) 633 WP_013998912.1 4Fe-4S binding protein -
  MMOS7_RS03960 (MMOS7_07690) - 731365..731709 (+) 345 WP_013998911.1 cupin domain-containing protein -
  MMOS7_RS03965 (MMOS7_07700) - 731846..732280 (+) 435 WP_231858395.1 hypothetical protein -
  MMOS7_RS03970 (MMOS7_07710) - 732288..732845 (-) 558 WP_011170669.1 YqhA family protein -
  MMOS7_RS03975 (MMOS7_07720) - 733198..733431 (+) 234 WP_013998910.1 hypothetical protein -
  MMOS7_RS03980 (MMOS7_07730) uvrB 733467..735407 (-) 1941 WP_119720830.1 excinuclease ABC subunit UvrB Machinery gene
  MMOS7_RS03985 (MMOS7_07740) uvrC 735404..736987 (-) 1584 WP_119720831.1 excinuclease ABC subunit UvrC Machinery gene
  MMOS7_RS03990 (MMOS7_07750) uvrA 736995..739850 (-) 2856 WP_119720832.1 excinuclease ABC subunit UvrA Machinery gene
  MMOS7_RS03995 (MMOS7_07760) - 739977..740396 (-) 420 WP_119720833.1 EamA family transporter -

Sequence

Protein


Download         Length: 646 a.a.        Molecular weight: 74806.94 Da        Isoelectric Point: 5.8264

>NTDB_id=54791 MMOS7_RS03980 WP_119720830.1 733467..735407(-) (uvrB) [Methanococcus maripaludis OS7]
MSSPDFKLKAEFKPKGSQPEAIAGLVKDLEKNPEKSKQTLLGVTGSGKTFTIANVIEKVQKPTLVIAHNKTLAAQLYNEF
KEFFPENRVEYFVSYYDYYQPESYIPQKDQYIEKDAQINPKIEQMRLRATSAILSRRDVIIVASVSCIYGLGNPELFKEM
GFELKVGEKIKRSDIIEKLVDIQYERNDMELVPGRFRVKGDTLDIIPGYQDDILRVEMFGDEIDRIYELDPKNMSKKHEI
DSFYMYPAKHFVIPEEDKKNAINSILKELDEWLPNLDMLKSHRLKQKTLYDIEMIEETGSCKGIENYSRHFENRKEGEPA
YCLLDYFPEDFLIVIDESHQTIPQIRGMYKGDRSRKQSLIDYGFRLPSAYDNRPLKFEEFKKYMNNVIFVSATPGEYELD
NSNQVVEQIIRPTGLLDPEVEIRPIENQVEDIIKETEKMVEKGERVLITTLTKRLAEELTEYLAKRNVKARYLHSDIDTI
ERTEIIRNLRLGKFDCLVGINLLREGLDIPEVGFVGILDADKEGFLRNDKSLIQTIGRAARNANSKVVLYADKMTDSIKK
AVSETERRRKLQKEHNEKHNITPQTIVKPIREKVVDISDVKHIPVADIPNVIVELEAEMYEAAEALEFEKAIKIRDTIAK
LKKKIK

Nucleotide


Download         Length: 1941 bp        

>NTDB_id=54791 MMOS7_RS03980 WP_119720830.1 733467..735407(-) (uvrB) [Methanococcus maripaludis OS7]
ATGAGTTCTCCCGATTTCAAGTTAAAAGCAGAGTTTAAACCAAAAGGGTCCCAGCCAGAAGCAATTGCAGGGCTGGTTAA
AGACCTTGAAAAAAATCCAGAAAAAAGTAAGCAGACACTGCTTGGTGTTACAGGTTCTGGAAAAACTTTTACTATTGCAA
ATGTTATTGAAAAAGTTCAAAAACCAACACTGGTAATTGCGCACAATAAAACACTTGCGGCACAACTTTATAATGAGTTT
AAAGAATTCTTTCCTGAAAATCGAGTAGAATATTTTGTTTCGTACTATGATTACTACCAGCCAGAATCATATATTCCACA
AAAAGATCAATATATTGAAAAGGATGCACAAATCAACCCGAAAATTGAGCAGATGCGTCTTCGTGCAACTTCTGCAATTC
TTTCGAGAAGAGACGTGATAATTGTTGCGTCAGTTTCCTGCATATACGGTCTTGGAAATCCTGAACTTTTTAAAGAAATG
GGTTTTGAACTTAAAGTCGGAGAAAAAATCAAAAGATCTGACATTATTGAAAAATTAGTGGATATTCAATACGAAAGAAA
CGATATGGAATTAGTTCCAGGAAGATTCAGGGTAAAAGGCGATACATTAGATATTATTCCCGGATATCAGGACGATATTT
TAAGAGTTGAAATGTTTGGGGATGAAATAGATAGAATTTATGAATTGGATCCAAAAAACATGAGCAAAAAACATGAAATA
GATTCATTTTACATGTACCCTGCAAAACACTTTGTAATTCCTGAAGAAGATAAGAAAAATGCAATTAACTCCATTTTAAA
AGAATTAGATGAGTGGCTCCCAAATTTAGACATGTTAAAATCTCATCGGTTAAAACAAAAAACCCTATACGATATTGAAA
TGATAGAAGAAACTGGAAGCTGTAAGGGGATTGAAAATTATTCGAGGCACTTTGAAAATAGAAAAGAAGGAGAACCTGCA
TACTGCCTTTTAGACTATTTCCCAGAAGATTTTTTGATTGTAATTGATGAAAGCCACCAAACCATCCCACAAATTCGCGG
AATGTATAAAGGCGATAGATCAAGAAAACAGTCATTGATTGATTACGGTTTCAGGCTTCCAAGTGCATATGACAACCGCC
CACTTAAATTTGAAGAATTTAAAAAATACATGAATAATGTAATTTTTGTGTCAGCAACACCGGGCGAATACGAGTTAGAT
AACTCAAATCAAGTTGTAGAACAGATTATTCGGCCAACAGGATTGCTTGATCCAGAAGTTGAAATAAGACCGATTGAAAA
TCAGGTTGAAGATATCATAAAAGAAACTGAAAAAATGGTCGAAAAAGGAGAAAGGGTATTGATTACGACACTTACAAAGC
GTCTTGCAGAAGAATTAACAGAATATTTGGCAAAAAGAAATGTTAAAGCAAGATATCTACATTCTGACATAGATACCATT
GAAAGAACTGAAATTATTCGAAATTTAAGGCTTGGAAAATTCGACTGCCTCGTTGGAATAAATTTATTGAGAGAAGGTTT
AGACATTCCGGAAGTTGGATTCGTTGGAATACTCGATGCAGACAAAGAAGGGTTTTTGAGAAACGATAAAAGCCTGATTC
AAACCATTGGTCGAGCTGCAAGAAATGCAAACTCAAAAGTTGTGCTTTATGCTGACAAAATGACCGATTCAATTAAAAAA
GCAGTTTCTGAAACTGAAAGAAGAAGAAAACTTCAAAAAGAACACAATGAAAAGCACAATATCACGCCTCAAACTATTGT
AAAACCGATAAGAGAAAAAGTAGTTGATATTTCCGATGTAAAACACATCCCTGTAGCAGATATTCCAAATGTTATTGTAG
AACTTGAAGCTGAAATGTATGAAGCTGCAGAAGCGCTCGAATTTGAAAAAGCAATAAAAATAAGAGATACAATTGCAAAA
CTGAAGAAAAAAATTAAATAA

Domains

Predicted by InterProScan.

Ultra-violet resistance protein B (UvrB)

(549-591)

Type III restriction enzyme, res subunit (ResIII)

(12-122)

UvrB interaction domain (UvrB_inter)

(163-251)

UvrB/uvrC motif (UVR)

(610-644)

Helicase conserved C-terminal domain (Helicase_C)

(431-542)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

55.521

100

0.56
  uvrB Streptococcus pneumoniae R6

55.368

100

0.559
  uvrB Streptococcus pneumoniae D39

55.368

100

0.559