Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   MMOS7_RS03985 Genome accession   NZ_AP011528
Coordinates   735404..736987 (-) Length   527 a.a.
NCBI ID   WP_119720831.1    Uniprot ID   -
Organism   Methanococcus maripaludis OS7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 730404..741987
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MMOS7_RS03955 (MMOS7_07680) - 730715..731347 (+) 633 WP_013998912.1 4Fe-4S binding protein -
  MMOS7_RS03960 (MMOS7_07690) - 731365..731709 (+) 345 WP_013998911.1 cupin domain-containing protein -
  MMOS7_RS03965 (MMOS7_07700) - 731846..732280 (+) 435 WP_231858395.1 hypothetical protein -
  MMOS7_RS03970 (MMOS7_07710) - 732288..732845 (-) 558 WP_011170669.1 YqhA family protein -
  MMOS7_RS03975 (MMOS7_07720) - 733198..733431 (+) 234 WP_013998910.1 hypothetical protein -
  MMOS7_RS03980 (MMOS7_07730) uvrB 733467..735407 (-) 1941 WP_119720830.1 excinuclease ABC subunit UvrB Machinery gene
  MMOS7_RS03985 (MMOS7_07740) uvrC 735404..736987 (-) 1584 WP_119720831.1 excinuclease ABC subunit UvrC Machinery gene
  MMOS7_RS03990 (MMOS7_07750) uvrA 736995..739850 (-) 2856 WP_119720832.1 excinuclease ABC subunit UvrA Machinery gene
  MMOS7_RS03995 (MMOS7_07760) - 739977..740396 (-) 420 WP_119720833.1 EamA family transporter -
  MMOS7_RS04000 (MMOS7_07770) - 740406..740609 (-) 204 WP_011170675.1 exodeoxyribonuclease VII small subunit -
  MMOS7_RS04005 (MMOS7_07780) xseA 740631..741854 (-) 1224 WP_119720834.1 exodeoxyribonuclease VII large subunit -

Sequence

Protein


Download         Length: 527 a.a.        Molecular weight: 61455.15 Da        Isoelectric Point: 9.7728

>NTDB_id=54792 MMOS7_RS03985 WP_119720831.1 735404..736987(-) (uvrC) [Methanococcus maripaludis OS7]
MINISDIPKNPGCYIYKNESGTVIYVGKAKNLKKRVSSYFNKKNHDPKTEKLVKSIYEMEFIVTDNEVEALILENTLIKK
YSPKYNIDLKDSKNYAYIYISEENFPRIGISRNKSKKGKFYGPFTSAKERDYVLDVLKKTFKIRSCKNMHKRPCLRHHIK
NCTAPCSGDITSKDYLNQIKKAEHVLKGHIDSLIDELKIEMDNKSKNLQFEEALLIREEINAIERLKTRQNVKRDVKYNE
DVISILEKSGKLHIMVFNVLKGTLFDRKYFEFDYTENFFEEFLIQYYSENEVPSEIIISELPKNLEEDNNEYSSDAILEY
LSKKKGSKVAFKIPKQGEKKQLLDLAIKNLEIYVNGNEIKVQRLKNKLMLDKSPNIIECFDISHLSGTSTVGSMVQFRNG
KPDKKNYRRFKIKTVSGIDDFKSISEVVFRRYSKLLEENLELPDLIIIDGGKGQLSSAFSELRKLKLKIPLISIAKREEE
IYTPGIENPLPIKKNEKASLFIQEIRDEAHRFAINYNRLLRKKELIK

Nucleotide


Download         Length: 1584 bp        

>NTDB_id=54792 MMOS7_RS03985 WP_119720831.1 735404..736987(-) (uvrC) [Methanococcus maripaludis OS7]
ATGATAAATATTTCAGATATTCCAAAAAATCCGGGCTGTTATATTTATAAAAACGAATCCGGAACTGTAATTTATGTTGG
GAAAGCAAAAAACTTGAAAAAAAGAGTTAGTAGCTACTTTAACAAAAAAAATCACGATCCTAAAACCGAAAAACTTGTAA
AATCAATTTACGAGATGGAATTTATCGTAACAGATAACGAAGTCGAAGCTTTGATTTTAGAAAATACGTTAATCAAAAAA
TACAGTCCTAAATACAATATCGACTTAAAAGACTCGAAAAATTACGCATATATATACATTAGCGAAGAAAATTTCCCAAG
AATTGGAATATCGAGAAATAAATCAAAAAAAGGAAAATTTTATGGGCCATTTACTTCTGCAAAGGAAAGAGATTATGTTT
TGGATGTTTTAAAAAAGACATTTAAAATCAGGTCATGCAAAAACATGCACAAACGTCCCTGTTTAAGGCACCATATAAAA
AACTGCACCGCGCCATGTAGTGGGGATATAACCTCCAAAGATTATTTGAATCAAATAAAAAAGGCAGAACATGTTTTAAA
AGGACATATTGATTCATTGATTGATGAACTTAAAATTGAAATGGACAATAAATCAAAAAATCTGCAGTTTGAAGAAGCGT
TACTAATTAGGGAAGAAATAAATGCAATTGAAAGACTTAAGACTCGTCAAAACGTTAAAAGAGATGTAAAATATAATGAA
GATGTAATCAGCATCCTTGAAAAAAGCGGAAAACTCCATATAATGGTTTTTAATGTACTAAAAGGAACGCTTTTTGATAG
AAAATACTTTGAATTTGATTACACAGAAAATTTCTTTGAAGAGTTTTTAATTCAATACTATTCAGAAAACGAAGTTCCTT
CAGAGATCATAATTTCGGAGCTGCCCAAAAATCTTGAAGAAGATAATAATGAATACAGTTCTGATGCAATTTTAGAATAT
CTGTCAAAAAAGAAAGGTTCAAAAGTTGCTTTTAAAATCCCTAAACAAGGCGAGAAAAAACAGCTTTTAGACCTTGCTAT
AAAAAATCTTGAAATTTATGTTAATGGAAATGAAATAAAAGTTCAAAGATTAAAAAACAAACTAATGCTTGATAAAAGTC
CAAACATAATAGAATGCTTTGATATATCACACCTTTCAGGAACATCTACTGTTGGATCAATGGTCCAGTTTAGAAATGGA
AAACCTGACAAAAAAAATTATCGCAGATTTAAAATAAAAACAGTTTCAGGAATAGATGACTTCAAATCCATTTCTGAAGT
GGTATTTAGGCGATACAGCAAATTACTCGAAGAAAATTTGGAATTGCCTGATTTAATAATTATTGATGGTGGAAAAGGCC
AGCTTTCGTCAGCATTTTCTGAACTTCGAAAATTAAAACTTAAAATTCCGCTAATTTCAATCGCAAAACGTGAAGAAGAA
ATTTACACTCCAGGAATTGAAAATCCTCTTCCAATAAAGAAAAATGAAAAAGCATCCCTATTTATTCAAGAAATTCGTGA
TGAAGCACATAGATTTGCAATAAATTATAATCGATTACTTAGGAAAAAGGAATTGATAAAATGA

Domains

Predicted by InterProScan.

UvrB/uvrC motif (UVR)

(192-225)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(366-514)

GIY-YIG catalytic domain (GIY-YIG)

(11-86)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae R6

39.299

100

0.404
  uvrC Streptococcus pneumoniae D39

39.299

100

0.404
  uvrC Streptococcus pneumoniae TIGR4

39.299

100

0.404