Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   MMOS7_RS03990 Genome accession   NZ_AP011528
Coordinates   736995..739850 (-) Length   951 a.a.
NCBI ID   WP_119720832.1    Uniprot ID   -
Organism   Methanococcus maripaludis OS7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 731995..744850
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MMOS7_RS03970 (MMOS7_07710) - 732288..732845 (-) 558 WP_011170669.1 YqhA family protein -
  MMOS7_RS03975 (MMOS7_07720) - 733198..733431 (+) 234 WP_013998910.1 hypothetical protein -
  MMOS7_RS03980 (MMOS7_07730) uvrB 733467..735407 (-) 1941 WP_119720830.1 excinuclease ABC subunit UvrB Machinery gene
  MMOS7_RS03985 (MMOS7_07740) uvrC 735404..736987 (-) 1584 WP_119720831.1 excinuclease ABC subunit UvrC Machinery gene
  MMOS7_RS03990 (MMOS7_07750) uvrA 736995..739850 (-) 2856 WP_119720832.1 excinuclease ABC subunit UvrA Machinery gene
  MMOS7_RS03995 (MMOS7_07760) - 739977..740396 (-) 420 WP_119720833.1 EamA family transporter -
  MMOS7_RS04000 (MMOS7_07770) - 740406..740609 (-) 204 WP_011170675.1 exodeoxyribonuclease VII small subunit -
  MMOS7_RS04005 (MMOS7_07780) xseA 740631..741854 (-) 1224 WP_119720834.1 exodeoxyribonuclease VII large subunit -
  MMOS7_RS04010 (MMOS7_07790) - 741962..743314 (-) 1353 WP_013998904.1 MATE family efflux transporter -
  MMOS7_RS04015 (MMOS7_07800) - 743451..743768 (+) 318 WP_013998903.1 hypothetical protein -
  MMOS7_RS04020 (MMOS7_07810) - 743843..744763 (+) 921 WP_119720835.1 DNA adenine methylase -

Sequence

Protein


Download         Length: 951 a.a.        Molecular weight: 106249.45 Da        Isoelectric Point: 7.1997

>NTDB_id=54793 MMOS7_RS03990 WP_119720832.1 736995..739850(-) (uvrA) [Methanococcus maripaludis OS7]
MKDLIIKGAREHNLKNISLTLPRNNLIVVTGVSGSGKSTIAFDTIYAEGQRRYVESLSAYARQFLGLMNKPDVDSIEGLS
PAIAIQQKTTSKNPRSTVGTVTEIYDYLRLLYARIGIPYCPEHNIRIESQSPEKIAEKIEEEFSETVTILSPIVRHKKGT
YQKLFKDLNSEGFARIRVNGEIYRTDDEITLERYKKHDIEIVIDRLTPKDDHSRLVEACERALERSGGLLIVTGNKNNEE
VEKIYSSNLACPICGISFEELQPRMFSFNSPFGACEYCSGLGIKMEFDADLIIPDKNKCIADGAVALYRNFLDGYRSQHL
AAVANHFGFTVLTPIKDLSKEQLDILMYGSPEKIHFKVSNGSGDTEWSQNKPWEGLIPQSIRLYNETKSEYRRKELEKFM
KVSLCPKCGGKRLKDKALAVKIEDKSIIDLTDLSISKAEEFFNNLKLTDKEYEIAKQVIKEIKSRLKFLNDVGLGYLTLS
RRSGTLSGGEAQRIRLATQIGSNLTGVLYVLDEPSIGLHQRDNQKLIETLHKLRNLDNTLVVVEHDEDTILNADYVVDMG
PGAGVHGGDVVAVGTPMEISKNKDSLTGKYLSGELKIEIPKNRRKSDKFLKLSNCKQNNLKNVSVEIPTGVFNVITGVSG
SGKSTLIYENLYPALKEKIKSDESVGELDFEDQLYENTKEKCNLEINSEIDKVVVIDQSPIGRTPRSNPATYTKVFDKIR
QVFAETKEAKVKGYGPGRFSFNVKGGRCENCQGDGVIKIEMNFLPDVFVECEECKGARYNHETLEVKYKGKSISDVLNMS
VEEAREHFKNIPQISNKLKTLCDVGLGYIKLGQSSTTLSGGEAQRIKLTRELSKRATGNTIYLLDEPTTGLHFHDVKKLI
DVLNSLVEKGNTVVVIEHNLDVIKCADHIIDLGPEGGEFGGEIIATGTPEEIAKCKLSHTGKFLKNILSKN

Nucleotide


Download         Length: 2856 bp        

>NTDB_id=54793 MMOS7_RS03990 WP_119720832.1 736995..739850(-) (uvrA) [Methanococcus maripaludis OS7]
ATGAAAGATCTCATCATAAAAGGCGCAAGAGAGCATAATTTAAAAAATATCTCGCTAACACTCCCAAGAAATAATTTAAT
AGTTGTAACTGGAGTTTCTGGTTCTGGAAAGTCCACGATAGCATTTGATACAATTTACGCAGAAGGTCAGAGAAGGTATG
TTGAATCACTTTCAGCATATGCAAGACAGTTTTTAGGACTTATGAATAAACCTGATGTTGATAGTATCGAAGGATTATCT
CCTGCAATTGCAATACAGCAGAAAACAACGAGCAAAAACCCAAGAAGTACCGTTGGAACAGTTACTGAAATTTATGATTA
CTTAAGACTGCTTTATGCAAGAATTGGAATCCCATACTGTCCTGAACACAACATTAGAATAGAATCACAGAGCCCTGAAA
AAATAGCTGAGAAAATCGAAGAAGAATTTTCTGAAACTGTGACTATATTATCCCCAATTGTAAGGCATAAAAAAGGAACC
TATCAAAAACTCTTTAAGGACCTAAATTCTGAAGGTTTTGCAAGAATTCGTGTAAATGGCGAAATTTACAGAACTGATGA
CGAAATAACACTTGAAAGATATAAAAAACATGATATTGAAATTGTTATCGATAGATTAACTCCAAAAGACGACCATTCAA
GGCTTGTTGAAGCTTGTGAAAGAGCACTTGAACGTTCCGGCGGACTTTTGATTGTAACAGGCAATAAAAATAATGAAGAA
GTTGAAAAAATTTATTCTTCAAATTTAGCCTGCCCAATTTGCGGTATTTCGTTTGAAGAGCTTCAGCCAAGAATGTTTTC
ATTTAACAGCCCATTTGGTGCATGTGAATACTGTAGCGGTCTTGGAATAAAAATGGAGTTTGATGCGGACTTAATAATTC
CTGATAAAAATAAATGCATTGCTGACGGTGCAGTTGCGCTTTATAGAAACTTCCTTGATGGATACAGGTCACAACATCTG
GCGGCAGTTGCAAACCACTTTGGATTTACGGTTTTAACACCGATAAAAGACCTTTCAAAAGAACAGCTTGACATTTTGAT
GTATGGAAGTCCTGAAAAAATTCATTTTAAAGTATCAAACGGCAGTGGGGATACCGAATGGAGCCAGAATAAACCATGGG
AAGGGCTTATCCCTCAATCAATTAGACTTTACAATGAAACTAAATCTGAATACCGAAGAAAAGAACTTGAAAAGTTCATG
AAAGTTAGTTTGTGCCCAAAATGTGGCGGAAAACGTTTAAAAGATAAAGCACTTGCTGTAAAAATAGAAGATAAATCGAT
TATCGATTTGACGGATCTTTCAATTTCAAAAGCGGAAGAATTCTTCAATAATTTAAAATTAACAGATAAAGAATATGAAA
TTGCAAAACAGGTCATAAAAGAAATAAAATCAAGATTAAAATTCTTAAATGACGTTGGTTTGGGATATTTAACACTTTCA
AGGCGTTCTGGAACACTTTCAGGTGGAGAAGCCCAGAGGATACGGCTTGCAACACAGATTGGATCAAACTTAACTGGTGT
TTTGTACGTACTTGATGAACCATCGATTGGACTTCACCAGAGAGATAACCAAAAATTAATCGAAACGCTCCATAAATTAA
GAAATTTAGATAACACCCTCGTTGTTGTTGAACATGACGAAGATACAATTTTAAATGCGGATTATGTCGTAGATATGGGC
CCGGGTGCTGGGGTTCATGGCGGAGATGTTGTTGCAGTTGGAACGCCAATGGAAATTTCAAAAAATAAGGATTCATTAAC
TGGAAAATACCTCTCAGGAGAATTAAAAATTGAAATACCAAAAAATAGAAGAAAAAGCGATAAATTCTTAAAACTTTCAA
ACTGCAAGCAGAACAATTTGAAAAATGTGTCTGTTGAAATTCCGACAGGCGTATTTAACGTGATTACAGGGGTTTCAGGA
AGTGGAAAATCCACTTTAATTTATGAAAACTTGTATCCTGCATTAAAAGAAAAAATAAAATCTGATGAGAGTGTTGGGGA
ACTTGATTTTGAGGATCAGCTCTACGAAAATACTAAAGAAAAATGCAATCTTGAAATTAACTCAGAAATTGATAAAGTTG
TTGTAATCGACCAGAGCCCAATTGGAAGAACCCCTAGATCAAATCCTGCAACTTACACGAAAGTATTTGATAAAATCAGA
CAGGTTTTTGCAGAAACCAAAGAAGCAAAAGTAAAAGGATATGGGCCGGGAAGATTCTCGTTTAACGTGAAAGGAGGTCG
CTGTGAAAACTGTCAGGGCGATGGAGTTATAAAAATAGAAATGAACTTTTTGCCAGACGTTTTTGTGGAATGTGAGGAGT
GTAAGGGTGCTAGATACAACCACGAAACTCTTGAAGTAAAATATAAAGGAAAATCAATTTCTGATGTTTTAAACATGAGT
GTTGAGGAAGCAAGAGAACATTTCAAAAATATTCCGCAGATTTCAAATAAATTAAAAACTTTGTGCGATGTTGGACTTGG
ATACATTAAACTAGGACAGAGTTCGACAACACTTTCAGGTGGAGAAGCCCAGAGAATTAAATTAACAAGAGAATTATCAA
AAAGAGCTACTGGAAACACCATATATTTACTCGATGAACCGACTACCGGACTTCACTTCCACGATGTTAAAAAATTAATC
GATGTTTTAAACAGCCTCGTTGAAAAAGGAAATACTGTAGTTGTAATCGAACATAACCTCGATGTAATAAAATGTGCCGA
CCATATAATCGACCTTGGACCTGAAGGAGGGGAATTTGGTGGCGAAATAATTGCAACAGGAACTCCTGAAGAAATTGCAA
AATGTAAATTAAGCCATACTGGAAAATTCTTAAAAAACATTCTTTCCAAAAATTAA

Domains

Predicted by InterProScan.

UvrA DNA-binding domain (UvrA_DNA-bind)

(288-398)

ABC transporter (ABC_tran)

(620-868)

UvrA interaction domain (UvrA_inter)

(130-233)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

53.918

100

0.543
  uvrA Streptococcus pneumoniae TIGR4

53.918

100

0.543
  uvrA Streptococcus pneumoniae D39

53.918

100

0.543