Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   JZM58_RS03170 Genome accession   NZ_CP071797
Coordinates   697848..698912 (+) Length   354 a.a.
NCBI ID   WP_207984783.1    Uniprot ID   -
Organism   Pseudomonas fluorescens strain YK-310     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 692848..703912
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JZM58_RS03160 (JZM58_03160) - 693753..695021 (+) 1269 WP_007952395.1 malic enzyme-like NAD(P)-binding protein -
  JZM58_RS03165 (JZM58_03165) - 695183..697630 (-) 2448 WP_207984782.1 penicillin-binding protein 1A -
  JZM58_RS03170 (JZM58_03170) comM 697848..698912 (+) 1065 WP_207984783.1 pilus assembly protein PilM Machinery gene
  JZM58_RS03175 (JZM58_03175) - 698912..699478 (+) 567 WP_007952387.1 PilN domain-containing protein -
  JZM58_RS03180 (JZM58_03180) pilO 699475..700098 (+) 624 WP_207984784.1 type 4a pilus biogenesis protein PilO -
  JZM58_RS03185 (JZM58_03185) - 700095..700619 (+) 525 WP_207984785.1 pilus assembly protein PilP -
  JZM58_RS03190 (JZM58_03190) pilQ 700634..702712 (+) 2079 WP_207984786.1 type IV pilus secretin PilQ Machinery gene
  JZM58_RS03195 (JZM58_03195) aroK 702717..703235 (+) 519 WP_045121685.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38120.64 Da        Isoelectric Point: 4.7539

>NTDB_id=547823 JZM58_RS03170 WP_207984783.1 697848..698912(+) (comM) [Pseudomonas fluorescens strain YK-310]
MLGLFNKKANTLLGIDISSTSVKLLELSRQGERYRVEAYAVEPLPASAVVEKNIAELEGVGQALSRVLVKARTGLKTVAV
AVAGSAVITKVIEMDAGLSDDELENQLKIEADQYIPYPLDEVAIDFEVQGVSPRNPERVNVLLAACRKENVEVREAALAL
AGLTARVVDVEAYALERSFGLLATQLAASQDRLTVAVVDIGATMTTLSVLHNGRIIYTREQLFGGRQLTEEIQRRYGLTL
EQAGLAKKQGGLPDDYVSEVLQPFREALVQQVSRSLQFFFASGQYNAVDHILLAGGTASVPGLDRLIEERLHTPTQVANP
FSDMALSSKVNAGALASDAPALMIACGLALRSFD

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=547823 JZM58_RS03170 WP_207984783.1 697848..698912(+) (comM) [Pseudomonas fluorescens strain YK-310]
GTGCTAGGACTCTTCAATAAAAAGGCCAATACGTTACTGGGGATCGACATCAGCTCCACATCGGTGAAGCTGCTGGAGCT
GAGCCGTCAGGGTGAGCGCTACCGGGTCGAGGCGTACGCGGTGGAGCCGTTGCCGGCGAGTGCCGTGGTCGAAAAGAACA
TCGCGGAGCTTGAGGGCGTCGGCCAGGCCCTGTCCCGGGTGCTGGTCAAGGCGCGCACCGGGCTGAAAACCGTGGCGGTG
GCGGTGGCCGGCTCAGCGGTGATCACCAAGGTCATCGAGATGGACGCCGGGCTGTCCGACGACGAACTGGAAAACCAGCT
CAAGATCGAGGCCGATCAGTACATTCCCTATCCGCTGGACGAGGTCGCCATCGACTTCGAAGTCCAGGGCGTTTCGCCGC
GCAACCCTGAACGGGTCAACGTGCTGCTGGCCGCCTGTCGCAAGGAAAACGTCGAAGTCCGCGAAGCGGCGCTCGCCCTC
GCCGGGCTGACCGCGCGGGTGGTGGATGTCGAAGCCTATGCGCTGGAGCGCTCGTTCGGCCTGCTGGCCACGCAACTGGC
CGCGTCCCAGGACCGGCTGACAGTAGCAGTGGTCGACATCGGCGCCACCATGACCACCCTCAGCGTCCTGCACAACGGCC
GGATCATCTACACCCGCGAACAGCTGTTCGGCGGGCGACAGCTGACCGAGGAAATCCAGCGCCGTTATGGCCTGACCCTT
GAACAGGCGGGGCTCGCCAAGAAGCAGGGCGGTCTGCCGGACGATTACGTCAGCGAGGTGCTGCAACCGTTTCGCGAGGC
ACTGGTGCAGCAGGTGTCGCGCTCCCTGCAGTTCTTTTTCGCCTCCGGCCAGTACAACGCCGTCGACCATATCCTGCTGG
CGGGTGGCACGGCGTCGGTGCCCGGGCTCGACCGGCTGATCGAAGAGCGCCTGCACACCCCGACCCAGGTCGCCAACCCG
TTTTCCGACATGGCCTTGAGCAGCAAGGTCAACGCCGGGGCCCTGGCGAGCGATGCGCCGGCCCTGATGATTGCCTGCGG
GCTCGCGCTCAGGAGTTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(14-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter nosocomialis M2

55.932

100

0.559
  pilM Acinetobacter baumannii D1279779

55.932

100

0.559
  comM Acinetobacter baylyi ADP1

53.955

100

0.54
  pilM Legionella pneumophila strain ERS1305867

49.577

100

0.497