Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   J1M35_RS02220 Genome accession   NZ_CP071796
Coordinates   493033..494565 (-) Length   510 a.a.
NCBI ID   WP_208009503.1    Uniprot ID   A0A975CH81
Organism   Ottowia testudinis strain 27C     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 487930..500518 493033..494565 within 0


Gene organization within MGE regions


Location: 487930..500518
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J1M35_RS02210 (J1M35_02210) - 490319..491125 (-) 807 WP_243457557.1 IS5 family transposase -
  J1M35_RS20940 (J1M35_02215) - 491380..492942 (+) 1563 WP_208009502.1 YihY/virulence factor BrkB family protein -
  J1M35_RS02220 (J1M35_02220) comM 493033..494565 (-) 1533 WP_208009503.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  J1M35_RS02225 (J1M35_02225) - 494581..495519 (-) 939 WP_208009504.1 amino acid ABC transporter substrate-binding protein -
  J1M35_RS02230 (J1M35_02230) - 495702..495935 (+) 234 WP_208009505.1 hypothetical protein -
  J1M35_RS02235 (J1M35_02235) - 495932..496270 (+) 339 WP_208009506.1 P-II family nitrogen regulator -
  J1M35_RS02240 (J1M35_02240) amt 496291..497637 (+) 1347 WP_208009507.1 ammonium transporter -
  J1M35_RS02245 (J1M35_02245) - 497732..498436 (+) 705 WP_208009508.1 class I SAM-dependent methyltransferase -
  J1M35_RS02250 (J1M35_02250) - 498487..499398 (-) 912 WP_208009509.1 methyltransferase domain-containing protein -
  J1M35_RS02255 (J1M35_02255) - 499664..500518 (-) 855 WP_208009510.1 rhamnan synthesis F family protein -

Sequence

Protein


Download         Length: 510 a.a.        Molecular weight: 53141.93 Da        Isoelectric Point: 8.1190

>NTDB_id=547801 J1M35_RS02220 WP_208009503.1 493033..494565(-) (comM) [Ottowia testudinis strain 27C]
MALALLQSRALLGLAAPQVTVEVHLANGLPSFTLVGLADVEVKEARERVRSALLNSGLEFPHNQRITVNLAPADLPKDSG
RFDLPIALGILAASGQIDGTRLAGWEFAGELSLSGELRPVRGALAVAAALQQAGVDAQLVLPPGSAEEAALVPGLAVHRA
RHLLDVVARFLPAATPVPPDLGDGFARVPPAPRAEGPRYADLADVKGQAAAKRALEIAAAGGHSLLLMGPPGTGKSMLAQ
RFAGLLPPMSEAEALQSAAVASLGGSFSLERWGQRPTRAPHHSASAVALVGGGSPPRPGEISLAHQGVLFLDELPEFPRA
ALEALREPLESGHITISRAAQRADFPASFQMVAAMNPCPCGYLGSAQRACRCTPDQIARYQGKLSGPLIDRIDLHVEVGA
LPPDELLAAPAGEPTAAVRARCMAARERALARQGVPNQALSGQAIDQHARLDEAARSFLHTAATRLGWSARATHRALKVA
RSIADLAGSDVVGTVHVAEAVQYRRALRGP

Nucleotide


Download         Length: 1533 bp        

>NTDB_id=547801 J1M35_RS02220 WP_208009503.1 493033..494565(-) (comM) [Ottowia testudinis strain 27C]
ATGGCACTGGCCTTGCTGCAAAGCCGCGCGTTGCTGGGCCTGGCCGCGCCGCAAGTGACCGTGGAGGTGCACCTGGCCAA
CGGGCTGCCCAGCTTCACGCTGGTCGGGCTGGCCGATGTGGAAGTGAAAGAGGCGCGCGAACGCGTGCGCAGCGCGCTGC
TGAACAGCGGGCTTGAGTTTCCGCACAACCAGCGCATCACCGTCAACTTGGCGCCGGCCGACTTGCCCAAGGATTCGGGG
CGGTTCGATTTGCCGATCGCGCTGGGCATCCTGGCCGCCAGCGGGCAGATCGACGGCACGCGGCTGGCCGGCTGGGAATT
TGCCGGCGAGCTGTCGCTGTCGGGCGAGCTGCGCCCAGTGCGCGGCGCGCTGGCCGTGGCTGCGGCGCTGCAGCAGGCGG
GCGTGGATGCGCAACTGGTGCTGCCGCCCGGCAGCGCCGAGGAAGCCGCGCTGGTACCCGGCCTGGCCGTGCACCGCGCG
CGCCATTTGCTCGACGTGGTGGCGCGGTTTTTGCCCGCCGCCACGCCGGTGCCGCCGGACCTGGGCGATGGCTTTGCCCG
CGTGCCCCCGGCGCCGCGCGCCGAGGGCCCGCGCTACGCCGATCTGGCCGACGTGAAAGGCCAAGCCGCCGCCAAGCGCG
CGCTGGAGATCGCCGCCGCCGGCGGTCATTCGCTGCTTTTGATGGGCCCGCCCGGCACCGGCAAATCGATGCTGGCGCAG
CGCTTTGCTGGCCTGCTGCCGCCGATGAGCGAGGCCGAGGCACTGCAAAGCGCCGCCGTGGCCAGCCTGGGCGGCAGCTT
CTCGCTGGAGCGCTGGGGCCAGAGGCCCACGCGCGCGCCACACCACTCGGCCAGCGCCGTCGCGCTGGTGGGCGGCGGCT
CGCCACCCCGGCCGGGCGAAATTTCCTTGGCCCATCAAGGTGTGCTGTTTCTGGATGAGCTGCCCGAATTTCCGCGCGCG
GCATTGGAGGCGCTGCGCGAGCCGCTCGAGAGCGGGCACATCACCATCAGCCGCGCGGCGCAGCGGGCGGATTTTCCGGC
CAGCTTCCAGATGGTGGCGGCGATGAACCCCTGCCCCTGCGGCTACCTTGGCTCGGCCCAGCGCGCCTGCCGCTGCACGC
CAGATCAGATCGCACGCTATCAGGGCAAACTCTCGGGCCCGCTGATCGACCGCATCGACCTGCATGTCGAAGTGGGCGCG
CTGCCGCCGGACGAATTGCTGGCCGCGCCCGCTGGCGAACCGACGGCGGCGGTGCGCGCGCGCTGCATGGCCGCGCGCGA
GCGGGCATTGGCGCGCCAAGGCGTGCCCAACCAGGCACTGAGCGGGCAGGCGATCGACCAGCACGCCCGGCTGGATGAGG
CAGCGCGCTCGTTTCTGCATACCGCCGCCACGCGCCTCGGCTGGAGCGCGCGCGCCACGCACCGCGCGCTGAAGGTGGCG
CGCAGCATCGCCGACCTGGCCGGCAGCGACGTGGTCGGCACCGTGCACGTGGCCGAAGCGGTGCAATACCGGCGCGCCCT
GCGTGGCCCGTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(412-504)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(201-403)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

53.846

99.412

0.535
  comM Vibrio campbellii strain DS40M4

52.148

100

0.524
  comM Haemophilus influenzae Rd KW20

50.581

100

0.512
  comM Glaesserella parasuis strain SC1401

50.491

99.804

0.504
  comM Legionella pneumophila str. Paris

49.709

100

0.502
  comM Legionella pneumophila strain ERS1305867

49.709

100

0.502
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.801

99.412

0.425