Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   J4G46_RS00755 Genome accession   NZ_CP071771
Coordinates   170104..170430 (+) Length   108 a.a.
NCBI ID   WP_208012058.1    Uniprot ID   -
Organism   Acinetobacter towneri strain GX7     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 163509..170430 170104..170430 within 0


Gene organization within MGE regions


Location: 163509..170430
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4G46_RS00715 (J4G46_00715) - 163509..164744 (+) 1236 WP_228291827.1 tyrosine-type recombinase/integrase -
  J4G46_RS14525 - 164760..164891 (+) 132 Protein_136 hypothetical protein -
  J4G46_RS00720 (J4G46_00720) - 165388..165624 (+) 237 WP_168400209.1 AlpA family transcriptional regulator -
  J4G46_RS00725 (J4G46_00725) - 165626..165844 (+) 219 WP_208012053.1 helix-turn-helix domain-containing protein -
  J4G46_RS00730 (J4G46_00730) - 165841..166347 (+) 507 WP_208012054.1 BRO family protein -
  J4G46_RS00735 (J4G46_00735) - 166340..166708 (+) 369 WP_208012055.1 hypothetical protein -
  J4G46_RS00740 (J4G46_00740) - 166718..166969 (+) 252 WP_208012056.1 hypothetical protein -
  J4G46_RS00745 (J4G46_00745) - 167011..167241 (+) 231 Protein_142 hypothetical protein -
  J4G46_RS00750 (J4G46_00750) - 167441..169852 (+) 2412 WP_208012057.1 DUF927 domain-containing protein -
  J4G46_RS00755 (J4G46_00755) ssb 170104..170430 (+) 327 WP_208012058.1 single-stranded DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12206.75 Da        Isoelectric Point: 10.1670

>NTDB_id=547657 J4G46_RS00755 WP_208012058.1 170104..170430(+) (ssb) [Acinetobacter towneri strain GX7]
MANLNRVTVMGVLGRDPETKNFPNGGSVTNFSVATTEHWKDKTTGERKEATEWHRISTNNRLAEIASQYLKKGSKVYIEG
SLRTRKWKDQSGADREVTEIKADVLQLL

Nucleotide


Download         Length: 327 bp        

>NTDB_id=547657 J4G46_RS00755 WP_208012058.1 170104..170430(+) (ssb) [Acinetobacter towneri strain GX7]
ATGGCAAATTTAAATAGAGTAACTGTGATGGGTGTACTAGGTCGTGACCCTGAAACTAAGAACTTTCCAAACGGCGGTAG
CGTTACCAATTTTAGCGTGGCGACTACTGAACACTGGAAAGACAAGACCACTGGAGAGCGCAAAGAGGCTACAGAATGGC
ACAGAATCAGCACCAACAACCGATTGGCAGAGATTGCTAGTCAATACCTCAAGAAAGGCAGCAAGGTTTATATTGAGGGC
AGCTTGAGAACAAGGAAGTGGAAAGACCAAAGCGGTGCAGATCGGGAAGTCACAGAGATAAAAGCCGATGTTCTGCAATT
GCTGTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

60.185

100

0.602
  ssb Vibrio cholerae strain A1552

53.211

100

0.537
  ssb Neisseria gonorrhoeae MS11

50

98.148

0.491
  ssb Neisseria meningitidis MC58

50

98.148

0.491
  ssbA Bacillus subtilis subsp. subtilis str. 168

37.143

97.222

0.361