Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   J4G45_RS02490 Genome accession   NZ_CP071770
Coordinates   341804..343939 (+) Length   711 a.a.
NCBI ID   WP_179996007.1    Uniprot ID   -
Organism   Acinetobacter towneri strain GX5     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 336804..348939
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4G45_RS02470 (J4G45_02470) pilM 338822..339880 (+) 1059 WP_004974460.1 pilus assembly protein PilM Machinery gene
  J4G45_RS02475 (J4G45_02475) pilN 339880..340515 (+) 636 WP_004974461.1 PilN domain-containing protein Machinery gene
  J4G45_RS02480 (J4G45_02480) comO 340512..341219 (+) 708 WP_004974463.1 type 4a pilus biogenesis protein PilO Machinery gene
  J4G45_RS02485 (J4G45_02485) pilP 341219..341743 (+) 525 WP_179997195.1 pilus assembly protein PilP Machinery gene
  J4G45_RS02490 (J4G45_02490) pilQ 341804..343939 (+) 2136 WP_179996007.1 type IV pilus secretin PilQ Machinery gene
  J4G45_RS02495 (J4G45_02495) aroK 343977..344519 (+) 543 WP_004974468.1 shikimate kinase AroK -
  J4G45_RS02500 (J4G45_02500) aroB 344538..345617 (+) 1080 WP_104852647.1 3-dehydroquinate synthase -
  J4G45_RS02505 (J4G45_02505) - 345628..346473 (+) 846 WP_136143922.1 hypothetical protein -

Sequence

Protein


Download         Length: 711 a.a.        Molecular weight: 76768.91 Da        Isoelectric Point: 5.4813

>NTDB_id=547615 J4G45_RS02490 WP_179996007.1 341804..343939(+) (pilQ) [Acinetobacter towneri strain GX5]
MNNLFRQFSMGAVAMAVMQVANAQVSITNIVPMQIPGQGTEIRVMFNGLPPQPAAYQLEQPSRLILDFDKAQQTLKQNSV
AVATKEASSVEVSSDAQRSRLTVNLADAGAFTTRVEGNTFILKINSTTATPVAAVTAQRSAQGVSNIGFQRGGEGEGQVV
IDLLGSNTPVDVQQQGSKIVVRTLGNKVPTHLARRLNVNDFATPVSTIDAHNDGSNGVITIQAAGSYEYMAYQAEDKLTI
SLKRPVDKNPFKPRAAQSYTGKKISLDFQDIEVRRVLQLLADFTGINMVAADTVQGNITLRLKDVPWDQALDIILKTKNL
DKRRNGNVIWIAPVSELIKAEEEEAKAIAQSVKLAPLQTEYIQLNYAKAADIEKLITQGKNASRGGSNTNTGTDPLGDSV
GSLLSPRGTVSVDPRTNTLIINDTSAKIDQIRQMIDLLDVSVKQVMIEARIVRATTDFTKEMGVKWGILSQGITNNNHLL
VGGSDTTLWNLREPEKDSDTGGWKYEIERPQNLNVDLGVTSPGASRIAFGLISLSDFMLDLELSALQADGYGEVISTPKV
LTADKQNAKVASGTQIPYQSSEGGGVNAVSTTEFIDATLSLDVTPSITPDGKVQMQLNITSDSPGAPTPTGQLTINKNAV
NTNVLVDNGETVVLGGIFEQQTANSQTKVPFLGDIPYIGRLFRKDIKSDNKRELLIFVTPRIVNDSVSRNH

Nucleotide


Download         Length: 2136 bp        

>NTDB_id=547615 J4G45_RS02490 WP_179996007.1 341804..343939(+) (pilQ) [Acinetobacter towneri strain GX5]
ATGAACAATTTGTTCCGTCAGTTTTCAATGGGCGCAGTCGCAATGGCAGTGATGCAAGTTGCCAATGCCCAAGTCAGCAT
TACCAACATCGTACCCATGCAAATTCCGGGACAGGGCACCGAAATTCGTGTCATGTTTAATGGTTTGCCACCTCAACCTG
CAGCATATCAGCTGGAACAACCTTCCCGCTTGATTTTAGATTTTGATAAAGCGCAACAAACGCTTAAGCAAAACAGCGTT
GCAGTCGCGACCAAAGAAGCCAGCTCTGTAGAGGTAAGCTCAGATGCACAGCGTTCACGTTTAACTGTGAACTTGGCCGA
TGCGGGCGCATTTACCACGCGTGTTGAAGGCAACACCTTTATTTTAAAAATCAACTCAACAACGGCAACCCCTGTGGCTG
CCGTGACTGCCCAACGTAGTGCGCAAGGTGTATCCAATATTGGTTTCCAGCGTGGCGGTGAAGGCGAAGGTCAGGTGGTG
ATTGATCTACTCGGTAGCAATACGCCTGTAGATGTGCAGCAGCAAGGCAGCAAAATTGTGGTGCGTACTTTAGGCAATAA
AGTACCAACACATTTGGCACGCCGTTTAAATGTAAATGATTTTGCAACACCTGTGTCGACCATTGATGCACACAATGATG
GCAGCAATGGCGTGATTACCATTCAGGCTGCGGGCAGCTATGAATATATGGCATATCAGGCAGAAGACAAGCTAACCATC
AGCTTAAAACGCCCTGTCGATAAAAACCCGTTTAAACCGCGTGCAGCGCAAAGCTATACAGGCAAAAAGATTTCACTGGA
TTTCCAAGACATCGAAGTGCGTCGTGTATTGCAGTTATTGGCTGATTTCACAGGCATTAACATGGTGGCAGCAGACACTG
TGCAAGGCAACATTACCTTACGTTTAAAAGATGTACCTTGGGATCAGGCTTTAGATATTATCCTGAAAACCAAAAACTTA
GATAAGCGTCGTAATGGCAACGTGATTTGGATTGCACCTGTTTCTGAATTGATTAAAGCCGAAGAAGAAGAAGCCAAAGC
GATTGCGCAAAGTGTGAAACTGGCGCCACTACAAACTGAATATATTCAATTGAACTATGCCAAAGCGGCAGATATTGAAA
AACTAATTACGCAAGGCAAGAATGCATCACGTGGTGGTTCAAATACCAATACAGGTACTGATCCATTAGGCGATAGCGTT
GGTAGCTTGTTGAGTCCACGCGGTACAGTGTCGGTAGATCCACGTACCAATACCTTAATCATCAACGATACATCGGCAAA
AATTGATCAGATTCGTCAAATGATTGATTTGCTAGATGTATCTGTGAAGCAGGTGATGATTGAAGCACGTATTGTTCGTG
CAACCACAGATTTCACCAAGGAAATGGGGGTGAAGTGGGGCATCTTGTCACAAGGGATTACCAACAATAACCACTTGTTG
GTGGGTGGTAGCGATACGACTTTGTGGAACTTGCGTGAACCAGAAAAAGATAGTGATACGGGTGGTTGGAAGTACGAAAT
TGAACGTCCACAAAACCTGAATGTCGATTTGGGTGTGACCAGTCCAGGTGCCAGCCGTATTGCATTTGGTTTAATCAGCT
TGTCTGACTTTATGCTCGATTTGGAGTTGTCGGCATTACAAGCAGATGGTTACGGTGAAGTGATTTCGACACCAAAAGTC
CTGACTGCAGATAAGCAAAATGCCAAAGTGGCATCGGGTACGCAAATTCCGTATCAATCTTCTGAAGGTGGTGGTGTCAA
TGCCGTATCTACCACAGAATTCATTGATGCGACTTTAAGTTTGGATGTGACCCCAAGTATTACGCCTGACGGTAAAGTCC
AAATGCAATTAAATATCACCAGTGACTCGCCAGGTGCACCTACACCTACAGGTCAGCTCACCATTAATAAGAACGCCGTG
AATACCAACGTTTTGGTGGATAATGGTGAAACTGTGGTCTTGGGTGGTATTTTTGAGCAACAAACGGCTAACTCACAAAC
CAAAGTTCCATTCTTGGGCGATATTCCTTATATCGGACGTTTATTCCGTAAAGATATCAAGTCGGACAACAAACGTGAGT
TGCTGATTTTTGTTACACCACGAATTGTTAATGACAGTGTTTCAAGAAATCATTAA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(360-444)

AMIN domain (AMIN)

(40-120)

Secretin and TonB N terminus short domain (STN)

(291-333)

Bacterial type II and III secretion system protein (Secretin)

(545-703)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

77.21

100

0.786
  pilQ Acinetobacter baumannii strain A118

77.072

100

0.785
  comQ Acinetobacter baylyi ADP1

73.846

100

0.743
  pilQ Pseudomonas aeruginosa PAK

40.714

98.453

0.401
  pilQ Legionella pneumophila strain ERS1305867

37.589

99.156

0.373
  pilQ Legionella pneumophila strain Lp02

37.589

99.156

0.373