Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   J4G45_RS02475 Genome accession   NZ_CP071770
Coordinates   339880..340515 (+) Length   211 a.a.
NCBI ID   WP_004974461.1    Uniprot ID   A0AAP4M279
Organism   Acinetobacter towneri strain GX5     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 334880..345515
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4G45_RS02460 (J4G45_02460) - 335227..336030 (+) 804 WP_207973783.1 putative RNA methyltransferase -
  J4G45_RS02465 (J4G45_02465) ponA 336100..338652 (-) 2553 WP_207973782.1 penicillin-binding protein 1A -
  J4G45_RS02470 (J4G45_02470) pilM 338822..339880 (+) 1059 WP_004974460.1 pilus assembly protein PilM Machinery gene
  J4G45_RS02475 (J4G45_02475) pilN 339880..340515 (+) 636 WP_004974461.1 PilN domain-containing protein Machinery gene
  J4G45_RS02480 (J4G45_02480) comO 340512..341219 (+) 708 WP_004974463.1 type 4a pilus biogenesis protein PilO Machinery gene
  J4G45_RS02485 (J4G45_02485) pilP 341219..341743 (+) 525 WP_179997195.1 pilus assembly protein PilP Machinery gene
  J4G45_RS02490 (J4G45_02490) pilQ 341804..343939 (+) 2136 WP_179996007.1 type IV pilus secretin PilQ Machinery gene
  J4G45_RS02495 (J4G45_02495) aroK 343977..344519 (+) 543 WP_004974468.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23682.07 Da        Isoelectric Point: 6.4746

>NTDB_id=547612 J4G45_RS02475 WP_004974461.1 339880..340515(+) (pilN) [Acinetobacter towneri strain GX5]
MAKINLLPWRDELREKRKKEFIVFCIAAAAVGVLLVALAWFFYNAKLQDQEQANQLVISTNQNLDVQLKSLEGLQEQRNA
IVERMKLIQGLQSQRPIAVRLVDELVRVTPSNMYLTKVSRTGNKFTFEGKAESPNTVAEFLRNLEASPWYRNAFMNSFLA
KEENKDKAPSSVVPRVEESYGTFVVTSDLEEIAIPVTPTESNSTSAAGAAQ

Nucleotide


Download         Length: 636 bp        

>NTDB_id=547612 J4G45_RS02475 WP_004974461.1 339880..340515(+) (pilN) [Acinetobacter towneri strain GX5]
ATGGCAAAGATTAACTTACTCCCTTGGCGCGATGAGCTAAGAGAAAAACGTAAAAAAGAATTTATTGTATTTTGTATTGC
AGCGGCTGCTGTTGGGGTGTTATTGGTGGCTTTGGCGTGGTTCTTCTACAACGCGAAGTTACAAGATCAAGAACAAGCCA
ATCAATTGGTGATCAGTACCAACCAAAACCTAGATGTACAATTAAAATCTTTAGAAGGCTTGCAAGAACAGCGTAATGCT
ATTGTTGAGCGCATGAAGCTTATTCAGGGTCTACAAAGTCAGCGTCCAATTGCCGTGCGTTTGGTGGATGAATTGGTGCG
TGTGACACCAAGCAATATGTACTTAACCAAAGTGAGCCGTACAGGCAATAAATTCACTTTTGAGGGCAAGGCTGAAAGTC
CAAATACGGTGGCTGAATTCTTGCGTAATTTGGAAGCATCGCCGTGGTATCGCAATGCATTTATGAATTCATTCTTAGCC
AAAGAAGAAAATAAAGATAAAGCACCAAGCTCTGTGGTTCCTCGTGTAGAGGAAAGTTACGGTACTTTTGTAGTGACTTC
AGATTTAGAAGAAATTGCAATTCCAGTAACACCAACAGAATCTAATTCAACATCAGCAGCGGGGGCAGCACAATGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-165)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

70.283

100

0.706
  comN Acinetobacter baylyi ADP1

71.078

96.682

0.687