Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   J4G45_RS02480 Genome accession   NZ_CP071770
Coordinates   340512..341219 (+) Length   235 a.a.
NCBI ID   WP_004974463.1    Uniprot ID   A0AB35LWR4
Organism   Acinetobacter towneri strain GX5     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 335512..346219
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4G45_RS02465 (J4G45_02465) ponA 336100..338652 (-) 2553 WP_207973782.1 penicillin-binding protein 1A -
  J4G45_RS02470 (J4G45_02470) pilM 338822..339880 (+) 1059 WP_004974460.1 pilus assembly protein PilM Machinery gene
  J4G45_RS02475 (J4G45_02475) pilN 339880..340515 (+) 636 WP_004974461.1 PilN domain-containing protein Machinery gene
  J4G45_RS02480 (J4G45_02480) comO 340512..341219 (+) 708 WP_004974463.1 type 4a pilus biogenesis protein PilO Machinery gene
  J4G45_RS02485 (J4G45_02485) pilP 341219..341743 (+) 525 WP_179997195.1 pilus assembly protein PilP Machinery gene
  J4G45_RS02490 (J4G45_02490) pilQ 341804..343939 (+) 2136 WP_179996007.1 type IV pilus secretin PilQ Machinery gene
  J4G45_RS02495 (J4G45_02495) aroK 343977..344519 (+) 543 WP_004974468.1 shikimate kinase AroK -
  J4G45_RS02500 (J4G45_02500) aroB 344538..345617 (+) 1080 WP_104852647.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26502.09 Da        Isoelectric Point: 4.8577

>NTDB_id=547613 J4G45_RS02480 WP_004974463.1 340512..341219(+) (comO) [Acinetobacter towneri strain GX5]
MSLDEFDEVNQDAAVAPKKKMTVEKFFQQFNTLDPNNYGAWPLSVKITCWIFIIFLILALGYFVVIKPKLDAIAAAHTQE
QNLLNEFREKDSKLRNLQQYQAQLQEMEANFNQQLEQLPKETEIPGLVEDINVTGVNSGLKFKNIRLENEIKQEFFIEQP
ISIEATGDYHAFGSFVSGTAALPRIVTMHDFEIVATENKDKKTDIPQVTYKAQAKTYRYVGSADAQTAGNAGGAK

Nucleotide


Download         Length: 708 bp        

>NTDB_id=547613 J4G45_RS02480 WP_004974463.1 340512..341219(+) (comO) [Acinetobacter towneri strain GX5]
ATGAGTCTCGATGAATTTGATGAAGTAAATCAGGATGCTGCTGTTGCTCCGAAAAAGAAAATGACAGTTGAAAAGTTTTT
TCAACAGTTCAATACCCTAGATCCTAACAATTATGGTGCTTGGCCACTTTCGGTCAAAATTACCTGCTGGATTTTTATTA
TTTTCCTGATTCTAGCTTTAGGTTACTTTGTCGTAATCAAGCCAAAGTTAGATGCCATTGCAGCAGCACATACACAAGAA
CAAAACTTGTTAAATGAGTTCCGTGAAAAAGATTCTAAATTGCGTAATTTGCAGCAATACCAAGCGCAATTACAAGAAAT
GGAAGCGAACTTTAACCAACAACTTGAACAATTGCCAAAAGAAACTGAAATTCCAGGTTTAGTTGAAGATATTAACGTCA
CAGGCGTGAATTCAGGTTTGAAGTTTAAAAACATTCGTTTAGAGAACGAAATTAAACAAGAGTTCTTTATTGAACAGCCA
ATTTCAATTGAAGCGACAGGCGATTATCATGCCTTTGGTTCATTCGTAAGCGGTACAGCAGCATTGCCACGTATTGTGAC
CATGCACGACTTTGAAATTGTGGCGACTGAAAATAAAGACAAGAAAACCGATATTCCGCAAGTGACCTATAAAGCACAAG
CAAAAACTTATCGTTATGTCGGCAGTGCAGATGCACAAACCGCGGGTAATGCTGGAGGAGCGAAATAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(74-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Acinetobacter baylyi ADP1

72.766

100

0.728
  pilO Acinetobacter baumannii D1279779

71.915

100

0.719