Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   J4G45_RS02485 Genome accession   NZ_CP071770
Coordinates   341219..341743 (+) Length   174 a.a.
NCBI ID   WP_179997195.1    Uniprot ID   -
Organism   Acinetobacter towneri strain GX5     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 336219..346743
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4G45_RS02470 (J4G45_02470) pilM 338822..339880 (+) 1059 WP_004974460.1 pilus assembly protein PilM Machinery gene
  J4G45_RS02475 (J4G45_02475) pilN 339880..340515 (+) 636 WP_004974461.1 PilN domain-containing protein Machinery gene
  J4G45_RS02480 (J4G45_02480) comO 340512..341219 (+) 708 WP_004974463.1 type 4a pilus biogenesis protein PilO Machinery gene
  J4G45_RS02485 (J4G45_02485) pilP 341219..341743 (+) 525 WP_179997195.1 pilus assembly protein PilP Machinery gene
  J4G45_RS02490 (J4G45_02490) pilQ 341804..343939 (+) 2136 WP_179996007.1 type IV pilus secretin PilQ Machinery gene
  J4G45_RS02495 (J4G45_02495) aroK 343977..344519 (+) 543 WP_004974468.1 shikimate kinase AroK -
  J4G45_RS02500 (J4G45_02500) aroB 344538..345617 (+) 1080 WP_104852647.1 3-dehydroquinate synthase -
  J4G45_RS02505 (J4G45_02505) - 345628..346473 (+) 846 WP_136143922.1 hypothetical protein -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19185.42 Da        Isoelectric Point: 7.1660

>NTDB_id=547614 J4G45_RS02485 WP_179997195.1 341219..341743(+) (pilP) [Acinetobacter towneri strain GX5]
MKIEKLSLALMATLLMVGCDSRIDAVNAQMAEIRNQPPLPIEPAPVFEPAPTFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNLARQLQPLENYALESLTMKGSMRQNGQILALIQTPDGEIERIQRGSYMGVNHGRVVNITPTQIDLIEIIPDGREGY
VERPRSLVLIGPAP

Nucleotide


Download         Length: 525 bp        

>NTDB_id=547614 J4G45_RS02485 WP_179997195.1 341219..341743(+) (pilP) [Acinetobacter towneri strain GX5]
ATGAAAATTGAAAAGCTTTCGTTGGCTCTGATGGCGACTTTGTTGATGGTGGGGTGTGATTCACGGATTGATGCAGTCAA
TGCACAAATGGCTGAAATTCGTAATCAGCCACCACTACCCATTGAACCTGCACCTGTGTTTGAGCCTGCACCAACCTTTA
ACTATGCAGCACACCAGCTCAAAAGCCCATTTATGCCAAGTTCATTGGCGGCAGAGCTTAAAATTATGGCAGGGAAGCGC
GTTTATCCGAACCTTGCTCGCCAGTTACAACCACTGGAAAATTACGCACTTGAGTCACTGACTATGAAAGGCAGTATGCG
TCAAAATGGTCAAATTTTGGCATTGATTCAAACACCTGATGGTGAAATTGAGCGTATCCAGCGTGGTAGCTATATGGGGG
TAAATCATGGTCGTGTGGTGAATATTACACCTACACAAATTGATTTAATCGAAATTATTCCAGATGGTCGTGAAGGTTAT
GTAGAACGTCCAAGAAGTTTAGTTTTAATTGGGCCTGCGCCATAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

76.571

100

0.77
  comL Acinetobacter baylyi ADP1

71.264

100

0.713