Detailed information NTG0054760

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: SPJ2_RS07310
• Genome accession: NZ_ALWR01000004
• Coordinates: 24194..25192 (-)
• Length: 332 a.a.
• NCBI ID: WP_003107456.1
• Uniprot ID: -
• Organism: Streptococcus parauberis KRS-02109
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 19194..30192

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SPJ2_RS07295 (SPJ2_1490)	-	21337..23115 (-)	1779	WP_003107454.1	acyltransferase family protein	-
SPJ2_RS07300 (SPJ2_1491)	-	23112..23513 (-)	402	WP_003105881.1	membrane protein	-
SPJ2_RS07305 (SPJ2_1492)	-	23542..23970 (-)	429	WP_003107455.1	low molecular weight protein-tyrosine-phosphatase	-
SPJ2_RS07310 (SPJ2_1493)	ruvB	24194..25192 (-)	999	WP_003107456.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
SPJ2_RS10725	-	25327..25425 (-)	99	WP_199764314.1	quorum-sensing system DWW-type pheromone	-
SPJ2_RS07315 (SPJ2_1494)	comR	25491..26408 (-)	918	WP_003107457.1	helix-turn-helix transcriptional regulator	Regulator
SPJ2_RS07320 (SPJ2_1495)	purB	26525..27817 (-)	1293	WP_003107459.1	adenylosuccinate lyase	-
SPJ2_RS07325 (SPJ2_1496)	purK	27827..28912 (-)	1086	WP_003107461.1	5-(carboxyamino)imidazole ribonucleotide synthase	-
SPJ2_RS07330 (SPJ2_1497)	purE	28899..29387 (-)	489	WP_003107462.1	5-(carboxyamino)imidazole ribonucleotide mutase	-

Sequence

Protein

• Length: 332 a.a.
• Molecular weight: 37552.04 Da
• Isoelectric Point: 4.4967

>NTDB_id=54760 SPJ2_RS07310 WP_003107456.1 24194..25192(-) (ruvB) [Streptococcus parauberis KRS-02109]
MTRILDEELMGDEALVERTLRPQYLREYIGQDKVKDQLTIFIEAAKMRDESLDHVLLFGPPGLGKTTMAFVIANELGVNL
KQTSGPAIEKAGDLVAVLNDLEPGDVLFIDEIHRMPMVVEEVLYSAMEDFYIDIMIGAGDTSRSVHLDLPPFTLIGATTR
AGMLSNPLRARFGITGHMEYYQVDDLTEIVERTADIFEMEIVHEAAQELARRSRGTPRIANRLLKRVRDYAQIMGDGVIT
DTITDKALDMLDVDHEGLDYVDQKILRTMIEMYNGGPVGLGTLSVNIAEERDTVEDMYEPYLIQKGFIMRTRTGRVATEK
AYRHLNYPYLEK

Nucleotide

• Length: 999 bp

>NTDB_id=54760 SPJ2_RS07310 WP_003107456.1 24194..25192(-) (ruvB) [Streptococcus parauberis KRS-02109]
ATGACTAGAATTTTAGATGAAGAATTAATGGGTGATGAAGCTTTAGTTGAGCGCACCCTTCGTCCTCAATATTTAAGAGA
GTATATCGGACAGGATAAGGTGAAAGACCAGCTGACTATTTTTATTGAAGCCGCCAAAATGCGTGATGAATCACTAGACC
ACGTGCTCTTGTTTGGGCCTCCTGGACTTGGTAAAACAACCATGGCTTTTGTGATTGCTAATGAACTAGGTGTCAACCTC
AAGCAAACGTCTGGTCCAGCAATTGAAAAGGCTGGTGATTTGGTAGCTGTTTTGAATGACTTGGAACCAGGAGATGTGCT
TTTCATTGATGAAATCCACCGGATGCCAATGGTAGTTGAAGAAGTCCTCTACAGTGCTATGGAAGACTTCTATATTGATA
TTATGATTGGGGCTGGTGATACAAGCCGTAGTGTCCATTTGGATTTACCTCCTTTTACCTTAATTGGAGCAACTACAAGG
GCAGGGATGCTCTCTAATCCTTTGCGTGCCCGTTTTGGAATCACTGGACACATGGAATATTACCAAGTTGATGATCTCAC
AGAAATTGTCGAACGGACAGCTGATATCTTTGAAATGGAAATTGTCCATGAAGCAGCCCAGGAATTGGCCCGCCGAAGTC
GAGGAACACCTCGTATAGCCAATCGTTTATTGAAGCGCGTGCGCGACTATGCCCAAATTATGGGTGATGGGGTAATTACA
GATACTATTACTGACAAAGCTTTAGATATGCTTGATGTTGACCATGAGGGATTGGACTACGTCGATCAGAAAATTTTACG
TACGATGATTGAAATGTACAATGGTGGACCTGTTGGTCTTGGGACACTGTCAGTGAATATTGCTGAGGAAAGAGACACAG
TTGAAGATATGTATGAACCCTATCTGATTCAAAAGGGCTTTATCATGCGAACACGGACTGGCCGTGTTGCGACAGAAAAA
GCATATCGTCATTTGAATTATCCTTACCTTGAAAAATAA

Domains

Predicted by InterProScan.

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (20-178)

• RuvB C-terminal winged helix domain (WHD_RuvB) (256-326)

• RuvB AAA lid domain (AAA_lid_4) (181-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Streptococcus pneumoniae TIGR4	90.361	100	0.904
ruvB	Streptococcus pneumoniae R6	90.06	100	0.901
ruvB	Streptococcus pneumoniae D39	90.06	100	0.901
ruvB	Bacillus subtilis subsp. subtilis str. 168	61.111	97.59	0.596
ruvB	Helicobacter pylori 26695	49.39	98.795	0.488
ruvB	Synechocystis sp. PCC 6803	50	93.373	0.467