Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   H020_RS14350 Genome accession   NZ_AKVY01000001
Coordinates   1437622..1438344 (-) Length   240 a.a.
NCBI ID   WP_001833285.1    Uniprot ID   -
Organism   Streptococcus pneumoniae TIGR4     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1432622..1443344
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H020_RS0107560 - 1435196..1436362 (-) 1167 WP_000521384.1 MalY/PatB family protein -
  H020_RS0107565 - 1436370..1437464 (-) 1095 WP_000031963.1 cystathionine gamma-synthase -
  H020_RS14350 rcrP 1437622..1438344 (-) 723 WP_001833285.1 ABC transporter ATP-binding protein Regulator
  H020_RS0107575 - 1438531..1439297 (-) 767 Protein_1437 ABC transporter transmembrane domain-containing protein -
  H020_RS0107580 amiA 1439469..1441427 (-) 1959 WP_000748873.1 peptide ABC transporter substrate-binding protein Regulator
  H020_RS0107585 - 1441630..1443252 (-) 1623 WP_000017791.1 putative polysaccharide biosynthesis protein -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27166.04 Da        Isoelectric Point: 5.2119

>NTDB_id=54754 H020_RS14350 WP_001833285.1 1437622..1438344(-) (rcrP) [Streptococcus pneumoniae TIGR4]
MNFNHVYFGYDENRPVLKDITCSIFKGQKIAFVGPSGSGKSTIVRLLERFYKPLSGDILMEQSSIYDFNLKEWRSKIAWV
SQNNAVLSGSIRDNLCLGLNRLVTDDELMKVLDLVSLGDEIRSMKEGLDTEVGERGRLLSGGRSQRLQIARAYLKDAEIL
IFDEATANLDADSEYAIISSLYSVLKEKTVVIIAHRLSTVKDVDCIFFLEEGKITGSGTHKELLENHERYARFVQEQMIE

Nucleotide


Download         Length: 723 bp        

>NTDB_id=54754 H020_RS14350 WP_001833285.1 1437622..1438344(-) (rcrP) [Streptococcus pneumoniae TIGR4]
TTGAATTTTAACCATGTCTATTTTGGTTATGATGAAAATCGACCTGTCTTAAAGGATATTACTTGTTCAATTTTCAAGGG
GCAAAAAATTGCTTTTGTTGGACCATCTGGATCAGGAAAATCAACGATTGTGCGTTTGTTAGAGCGGTTTTATAAACCGC
TTTCAGGAGATATTCTAATGGAGCAATCAAGTATATATGATTTTAACTTAAAAGAATGGAGAAGTAAAATCGCTTGGGTT
TCACAAAATAATGCAGTCTTATCTGGCAGTATTCGTGACAATCTTTGTCTCGGTTTGAATCGCTTAGTAACTGATGATGA
ATTGATGAAAGTGCTAGACTTAGTATCACTAGGTGATGAGATTCGCTCCATGAAAGAGGGACTAGATACTGAAGTTGGTG
AACGCGGACGACTCTTGTCAGGGGGGCGAAGCCAAAGACTTCAAATAGCTAGAGCCTACTTAAAAGATGCTGAAATTCTT
ATATTTGATGAAGCCACTGCTAATCTTGATGCGGATTCTGAGTATGCGATTATCAGTAGCCTCTATTCTGTACTAAAGGA
GAAGACGGTTGTGATTATAGCGCATCGTTTGTCAACGGTAAAAGATGTGGATTGTATTTTCTTCTTAGAGGAGGGGAAAA
TCACTGGCTCAGGAACTCATAAGGAACTACTGGAAAATCATGAGCGTTATGCTCGTTTTGTGCAGGAGCAAATGATAGAG
TGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(17-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

36.82

99.583

0.367
  rcrQ Streptococcus mutans UA159

36.25

100

0.363
  comA Streptococcus mitis SK321

37.179

97.5

0.362

Multiple sequence alignment