Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   PLE7327_RS03045 Genome accession   NC_019689
Coordinates   696186..696551 (-) Length   121 a.a.
NCBI ID   WP_015142393.1    Uniprot ID   -
Organism   Pleurocapsa sp. PCC 7327     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 691186..701551
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PLE7327_RS03030 (Ple7327_0649) - 691962..692756 (-) 795 WP_015142390.1 MlaE family lipid ABC transporter permease subunit -
  PLE7327_RS03035 (Ple7327_0650) pilJ 692856..695462 (-) 2607 WP_015142391.1 HAMP domain-containing methyl-accepting chemotaxis protein Machinery gene
  PLE7327_RS03040 (Ple7327_0651) - 695641..696177 (-) 537 WP_015142392.1 chemotaxis protein CheW -
  PLE7327_RS03045 (Ple7327_0652) pilH 696186..696551 (-) 366 WP_015142393.1 PleD family two-component system response regulator Machinery gene
  PLE7327_RS03050 (Ple7327_0653) - 696780..698006 (-) 1227 WP_015142394.1 response regulator -
  PLE7327_RS03055 (Ple7327_0654) hmpF 698506..700119 (+) 1614 WP_015142395.1 pilus motility taxis protein HmpF -
  PLE7327_RS03060 (Ple7327_0655) tilS 700152..701123 (-) 972 WP_015142396.1 tRNA lysidine(34) synthetase TilS -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13739.15 Da        Isoelectric Point: 7.8470

>NTDB_id=54754 PLE7327_RS03045 WP_015142393.1 696186..696551(-) (pilH) [Pleurocapsa sp. PCC 7327]
MSKVLVVEDSPTQQQIILDLLKNSGLKVTIVQDGVEALEHVQKYHPNLVILDIVMPRMNGYEVCRRLKSDPKTKDVPVIL
CSTKAEEFDRYWGMKQGADAYIVKPFQPVELLGTIKQLMRG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=54754 PLE7327_RS03045 WP_015142393.1 696186..696551(-) (pilH) [Pleurocapsa sp. PCC 7327]
ATGAGCAAAGTTCTGGTTGTAGAAGATAGTCCTACACAACAGCAGATAATTTTAGATTTACTCAAAAATAGCGGTTTAAA
AGTGACTATCGTTCAAGATGGGGTTGAAGCATTAGAACACGTTCAAAAATACCATCCCAACCTAGTCATCTTGGATATCG
TCATGCCTCGGATGAATGGCTACGAAGTTTGTCGGCGGCTCAAATCCGATCCAAAAACTAAAGATGTGCCAGTAATTCTC
TGCTCTACCAAAGCCGAAGAATTCGATCGCTATTGGGGAATGAAACAAGGAGCAGATGCTTACATAGTCAAGCCTTTTCA
ACCAGTAGAACTACTTGGAACTATTAAACAGCTAATGAGAGGATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

70.833

99.174

0.702
  vicR Streptococcus mutans UA159

37.5

99.174

0.372
  micA Streptococcus pneumoniae Cp1015

36.667

99.174

0.364
  pilG Acinetobacter baumannii strain A118

38.261

95.041

0.364

Multiple sequence alignment