Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   NOS7524_RS17690 Genome accession   NC_019684
Coordinates   4446102..4446467 (-) Length   121 a.a.
NCBI ID   WP_015139860.1    Uniprot ID   K9QWI0
Organism   Nostoc sp. PCC 7524     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4441102..4451467
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NOS7524_RS17680 (Nos7524_3645) - 4442644..4445541 (-) 2898 WP_015139858.1 methyl-accepting chemotaxis protein -
  NOS7524_RS17685 (Nos7524_3646) - 4445558..4446088 (-) 531 WP_015139859.1 chemotaxis protein CheW -
  NOS7524_RS17690 (Nos7524_3647) pilH 4446102..4446467 (-) 366 WP_015139860.1 response regulator Machinery gene
  NOS7524_RS17700 (Nos7524_3649) - 4446681..4447835 (-) 1155 WP_015139862.1 response regulator -
  NOS7524_RS29575 - 4448001..4448201 (-) 201 WP_144050885.1 hypothetical protein -
  NOS7524_RS17705 (Nos7524_3650) hmpF 4448236..4449987 (+) 1752 WP_015139863.1 pilus motility taxis protein HmpF -
  NOS7524_RS17710 (Nos7524_3651) tilS 4450029..4451036 (-) 1008 WP_015139864.1 tRNA lysidine(34) synthetase TilS -
  NOS7524_RS17715 (Nos7524_3652) - 4451116..4451445 (-) 330 WP_015139865.1 KGK domain-containing protein -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13396.51 Da        Isoelectric Point: 4.6926

>NTDB_id=54745 NOS7524_RS17690 WP_015139860.1 4446102..4446467(-) (pilH) [Nostoc sp. PCC 7524]
MSTVLIVEDSLAQREMITDLLKASGLTVTHATDGLEALEAIQTEPPDLVVLDIVMPRMNGYEVCRRLKSDPKTQNVPVVM
CSSKGEEFDRYWGMKQGADAYIAKPFQPTELVGTVKQLLRG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=54745 NOS7524_RS17690 WP_015139860.1 4446102..4446467(-) (pilH) [Nostoc sp. PCC 7524]
ATGAGTACAGTTCTGATTGTGGAAGACAGTCTTGCACAGAGGGAGATGATTACAGACCTCCTGAAAGCCAGTGGTTTAAC
AGTCACCCATGCCACTGACGGATTAGAAGCATTGGAGGCAATTCAAACCGAACCTCCTGATCTGGTGGTTTTAGATATTG
TCATGCCCCGAATGAATGGCTACGAAGTTTGCCGTCGGTTAAAGTCTGATCCCAAAACTCAAAATGTACCTGTGGTGATG
TGTTCTTCTAAAGGTGAAGAATTTGACCGCTACTGGGGCATGAAACAGGGAGCGGACGCGTATATAGCTAAACCGTTTCA
ACCAACTGAGTTGGTAGGAACAGTCAAACAACTGCTGCGAGGATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K9QWI0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

76.86

100

0.769
  micA Streptococcus pneumoniae Cp1015

40

99.174

0.397
  vicR Streptococcus mutans UA159

39.167

99.174

0.388
  pilG Acinetobacter baumannii strain A118

40.351

94.215

0.38
  pilL-C Synechocystis sp. PCC 6803

37.19

100

0.372

Multiple sequence alignment