Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   J3S98_RS12335 Genome accession   NZ_CP071729
Coordinates   1119488..1119997 (+) Length   169 a.a.
NCBI ID   WP_021165649.1    Uniprot ID   -
Organism   Lactococcus cremoris strain FM-YL11     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 1120074..1120964 1119488..1119997 flank 77


Gene organization within MGE regions


Location: 1119488..1120964
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J3S98_RS12335 comEC 1119488..1119997 (+) 510 WP_021165649.1 MBL fold metallo-hydrolase Machinery gene
  J3S98_RS05670 (J3S98_05670) - 1120074..1120964 (+) 891 WP_207873739.1 IS982 family transposase -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18923.62 Da        Isoelectric Point: 6.9787

>NTDB_id=547319 J3S98_RS12335 WP_021165649.1 1119488..1119997(+) (comEC) [Lactococcus cremoris strain FM-YL11]
MRASITAVDIGQGDSIFLQDKFNKENILIDTGGRLALPQKNWQKAQTQSNADKTLIPYLESMGVAHIDQLILTHTDADHV
GDFLSLADKIKIREIWISPGELTNISFVEKLKKAKIPIHVSKVGDKIPIFDSFLQVLSNGYTKKGDNNDSIVTYGNFYHT
KFLFTDPNC

Nucleotide


Download         Length: 510 bp        

>NTDB_id=547319 J3S98_RS12335 WP_021165649.1 1119488..1119997(+) (comEC) [Lactococcus cremoris strain FM-YL11]
ATGAGAGCAAGCATTACAGCAGTTGATATCGGACAAGGAGATAGTATTTTTCTACAAGATAAGTTTAATAAAGAAAACAT
TCTGATTGATACTGGGGGACGACTTGCTCTTCCTCAAAAAAATTGGCAAAAAGCGCAGACGCAATCAAATGCTGACAAAA
CGCTTATCCCTTATTTAGAATCCATGGGGGTGGCTCATATTGACCAACTTATTCTGACTCATACAGATGCTGACCATGTT
GGCGATTTCTTGTCCTTAGCTGATAAAATAAAAATAAGAGAAATCTGGATCAGTCCGGGAGAATTAACCAACATTAGTTT
TGTGGAAAAATTAAAAAAAGCAAAAATTCCGATTCATGTTAGTAAAGTTGGGGATAAAATTCCGATTTTTGATAGTTTTC
TTCAAGTTTTATCAAATGGTTACACTAAAAAAGGGGATAATAATGATTCCATAGTGACTTATGGAAACTTTTACCATACA
AAATTTCTTTTTACAGACCCGAATTGCTAG

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(11-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Lactococcus lactis subsp. cremoris KW2

98.788

97.633

0.964
  comEC/celB Streptococcus mitis SK321

46.707

98.817

0.462
  comEC/celB Streptococcus pneumoniae TIGR4

44.91

98.817

0.444
  comEC/celB Streptococcus pneumoniae Rx1

44.311

98.817

0.438
  comEC/celB Streptococcus pneumoniae D39

44.311

98.817

0.438
  comEC/celB Streptococcus pneumoniae R6

44.311

98.817

0.438
  comEC/celB Streptococcus mitis NCTC 12261

43.713

98.817

0.432
  comEC Latilactobacillus sakei subsp. sakei 23K

38.037

96.45

0.367