Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   J3S98_RS05910 Genome accession   NZ_CP071729
Coordinates   1167215..1168198 (+) Length   327 a.a.
NCBI ID   WP_021165609.1    Uniprot ID   -
Organism   Lactococcus cremoris strain FM-YL11     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1162215..1173198
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J3S98_RS05890 (J3S98_05890) - 1162281..1163117 (-) 837 WP_011676728.1 Cof-type HAD-IIB family hydrolase -
  J3S98_RS05895 (J3S98_05895) - 1163424..1164845 (+) 1422 WP_011676727.1 NCS2 family permease -
  J3S98_RS12650 - 1165054..1165275 (+) 222 WP_250638073.1 alpha/beta hydrolase -
  J3S98_RS05900 (J3S98_05900) - 1165314..1165901 (+) 588 WP_014572239.1 alpha/beta hydrolase -
  J3S98_RS05905 (J3S98_05905) - 1166055..1167140 (+) 1086 WP_014572240.1 YdcF family protein -
  J3S98_RS05910 (J3S98_05910) coiA 1167215..1168198 (+) 984 WP_021165609.1 competence protein CoiA family protein Machinery gene
  J3S98_RS05915 (J3S98_05915) pepF 1168273..1170078 (+) 1806 WP_021165608.1 oligoendopeptidase F Regulator
  J3S98_RS05920 (J3S98_05920) - 1170081..1170764 (+) 684 WP_011676723.1 O-methyltransferase -
  J3S98_RS05925 (J3S98_05925) - 1170920..1171846 (+) 927 WP_021165607.1 peptidyl-prolyl cis-trans isomerase -

Sequence

Protein


Download         Length: 327 a.a.        Molecular weight: 39064.82 Da        Isoelectric Point: 9.6841

>NTDB_id=547301 J3S98_RS05910 WP_021165609.1 1167215..1168198(+) (coiA) [Lactococcus cremoris strain FM-YL11]
MLTAIDENNKIINLLELERKELTGKFYCPSCHAELLIKNGQIKVLHFAHKSLKSCNLWLENESEQYLGLKKILYQWFKRT
DKVEIERYLPELNQRPDLLVNDKIAIEIQCSHLSIKRLKERTENYKAHGFKVLWLMGKDLWLAEQVTKLQKNLVYFSENR
GFFYWELDFQRKKLRLKSLIHEDLRGRIICLQEEIPFGKGRLIAHLRLPYLAQKLVKIPTFKDPKLSSFIRQQLYYQSPK
CMKIQEKYYQKGENLLTKKFEGPYIAPLGLNLLESFTDEMTITTFTQIDQNVKLYYENFLINFQRNSLEMLYPPCFYAIM
GKQKKEK

Nucleotide


Download         Length: 984 bp        

>NTDB_id=547301 J3S98_RS05910 WP_021165609.1 1167215..1168198(+) (coiA) [Lactococcus cremoris strain FM-YL11]
ATGCTGACAGCAATTGATGAAAATAATAAAATAATAAACTTACTGGAATTAGAACGCAAAGAATTGACCGGGAAATTTTA
TTGTCCTTCTTGTCATGCAGAGCTACTTATTAAAAATGGGCAGATAAAAGTTCTTCATTTTGCCCATAAATCTCTAAAGA
GCTGCAATTTATGGTTGGAAAATGAGTCAGAACAGTATTTAGGTTTGAAAAAAATATTATATCAGTGGTTTAAAAGGACT
GACAAAGTCGAAATTGAACGCTATTTGCCCGAACTTAACCAAAGACCAGATTTATTAGTAAATGACAAAATCGCTATTGA
GATACAATGCTCTCATTTATCTATTAAGCGCCTCAAAGAACGTACAGAAAATTATAAGGCGCATGGCTTTAAAGTGCTTT
GGTTGATGGGAAAGGATTTATGGCTGGCTGAACAGGTGACAAAACTTCAAAAAAATTTAGTTTATTTCTCGGAAAATAGA
GGATTCTTTTATTGGGAGTTAGATTTTCAGAGGAAAAAATTAAGATTAAAATCTCTTATTCATGAGGATTTACGCGGCAG
AATCATTTGCTTACAAGAGGAAATTCCTTTTGGAAAAGGACGACTTATTGCGCATCTACGCTTACCTTATTTGGCGCAAA
AACTGGTGAAAATTCCTACTTTTAAAGATCCTAAACTTTCTAGTTTTATTCGTCAGCAATTATACTATCAATCACCAAAA
TGTATGAAAATTCAAGAAAAATATTATCAAAAAGGAGAAAATTTACTGACGAAAAAATTTGAAGGTCCATACATTGCTCC
ACTAGGTTTAAATTTACTAGAGAGTTTTACTGACGAAATGACGATCACAACTTTTACTCAGATTGATCAAAATGTTAAGC
TTTACTATGAAAATTTTTTAATAAATTTCCAAAGAAATAGCCTTGAAATGCTCTATCCTCCCTGTTTCTATGCTATAATG
GGAAAGCAGAAGAAGGAAAAATAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(1-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Lactococcus lactis subsp. cremoris KW2

96.636

100

0.966
  coiA Streptococcus mitis NCTC 12261

43.827

99.083

0.434
  coiA Streptococcus pneumoniae TIGR4

42.593

99.083

0.422
  coiA Streptococcus pneumoniae Rx1

42.593

99.083

0.422
  coiA Streptococcus pneumoniae D39

42.593

99.083

0.422
  coiA Streptococcus pneumoniae R6

42.593

99.083

0.422