Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   J3S98_RS05915 Genome accession   NZ_CP071729
Coordinates   1168273..1170078 (+) Length   601 a.a.
NCBI ID   WP_021165608.1    Uniprot ID   -
Organism   Lactococcus cremoris strain FM-YL11     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1163273..1175078
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J3S98_RS05895 (J3S98_05895) - 1163424..1164845 (+) 1422 WP_011676727.1 NCS2 family permease -
  J3S98_RS12650 - 1165054..1165275 (+) 222 WP_250638073.1 alpha/beta hydrolase -
  J3S98_RS05900 (J3S98_05900) - 1165314..1165901 (+) 588 WP_014572239.1 alpha/beta hydrolase -
  J3S98_RS05905 (J3S98_05905) - 1166055..1167140 (+) 1086 WP_014572240.1 YdcF family protein -
  J3S98_RS05910 (J3S98_05910) coiA 1167215..1168198 (+) 984 WP_021165609.1 competence protein CoiA family protein Machinery gene
  J3S98_RS05915 (J3S98_05915) pepF 1168273..1170078 (+) 1806 WP_021165608.1 oligoendopeptidase F Regulator
  J3S98_RS05920 (J3S98_05920) - 1170081..1170764 (+) 684 WP_011676723.1 O-methyltransferase -
  J3S98_RS05925 (J3S98_05925) - 1170920..1171846 (+) 927 WP_021165607.1 peptidyl-prolyl cis-trans isomerase -
  J3S98_RS05930 (J3S98_05930) alaS 1172108..1174726 (+) 2619 WP_011676721.1 alanine--tRNA ligase -

Sequence

Protein


Download         Length: 601 a.a.        Molecular weight: 69994.70 Da        Isoelectric Point: 4.9158

>NTDB_id=547302 J3S98_RS05915 WP_021165608.1 1168273..1170078(+) (pepF) [Lactococcus cremoris strain FM-YL11]
MVKNRNEIPEALTWDLTTIFSTDQKWETELEKVKKELSLVETNDKGHLLDSAETLLTITKNMLSISQKVEKLYVYASMKN
DQDTREAKYQEYQSKATALYVNFGESYAFYEPEFLKITKETYEQWLEILQELKNYDHMFERLFAKKEHILSQKEEKILAA
AGEIFESPSETFEIFDNADVKFPFVKNELGEKIQLTHGNYSSLMESKNREVRKAAYEALYSNYEQYQHTYAKTLQTNVKV
HNFNAQIRAYDSARQAALMSNFVPEKVYDVLIEGIHQHLPLLHRYIELRKKILGISDFKMYDIYTPLSNLDYKFNYTEGV
KKAQEVLAIFGEEYSQKVKAAFDERWIDVEENVGKRSGAYSGGSYDTKAFMLLNWQGTLDDLFTLVHEMGHSIHSTFTRE
NQPYVYGDYPIFLAEIASTTNENILTETLLKESNDEKERFALLNHWLDSFRGTVFRQSQFAEFEQKIHEVDAEGEVLTSE
FLNSLYGELNEKYYGLSAKENPEIQFEWARIPHFYYNFYVFQYATGFAAASFLAEKVVHGSATDRQNYLDYLKAGSSAYP
LDVIAKAGVNMESTDYLESAFKLFEKRLNELEKLVEKGVHL

Nucleotide


Download         Length: 1806 bp        

>NTDB_id=547302 J3S98_RS05915 WP_021165608.1 1168273..1170078(+) (pepF) [Lactococcus cremoris strain FM-YL11]
ATGGTAAAAAATAGAAATGAAATCCCTGAAGCCTTGACTTGGGATTTGACAACAATTTTTTCAACAGATCAAAAATGGGA
AACAGAATTAGAGAAGGTAAAAAAAGAGCTTTCGCTTGTTGAGACAAATGATAAAGGTCATTTACTTGATTCAGCAGAAA
CTTTACTGACAATTACTAAAAATATGCTATCAATTTCTCAAAAAGTTGAAAAGCTTTATGTTTATGCTTCAATGAAAAAT
GATCAAGATACAAGAGAAGCAAAGTATCAAGAATATCAATCAAAAGCAACGGCCCTCTATGTTAATTTTGGGGAAAGTTA
TGCCTTTTATGAACCTGAGTTTTTAAAAATTACAAAAGAAACCTACGAACAATGGCTAGAAATCCTTCAGGAATTGAAAA
ATTACGATCACATGTTTGAACGTTTATTTGCTAAAAAAGAACATATCCTTAGTCAAAAAGAAGAAAAAATATTGGCGGCA
GCGGGTGAAATCTTTGAAAGTCCTTCGGAGACTTTTGAAATTTTCGATAATGCAGATGTTAAATTTCCTTTTGTTAAAAA
TGAATTGGGAGAAAAGATTCAGTTGACACATGGAAATTATAGCTCTCTTATGGAAAGTAAAAACAGGGAAGTAAGAAAAG
CGGCTTATGAAGCACTTTACAGCAATTATGAACAATATCAGCATACCTATGCAAAAACTTTGCAGACCAATGTAAAAGTT
CATAATTTCAATGCCCAAATACGCGCATATGATTCAGCACGTCAGGCAGCTTTGATGAGTAATTTTGTTCCAGAAAAAGT
TTATGACGTCTTGATAGAAGGCATTCATCAACACTTACCACTTTTACATCGCTATATTGAATTACGTAAAAAAATCTTAG
GAATTTCTGATTTCAAGATGTATGATATCTATACTCCATTATCTAATTTAGATTATAAATTCAATTACACTGAAGGAGTT
AAGAAAGCGCAAGAAGTGCTTGCAATTTTTGGTGAAGAGTATAGTCAGAAAGTTAAAGCGGCTTTTGATGAACGTTGGAT
TGATGTTGAAGAAAATGTCGGGAAACGGTCAGGGGCATACTCAGGTGGTTCTTATGATACCAAGGCATTCATGTTACTCA
ATTGGCAAGGGACATTGGACGATCTTTTTACATTGGTTCATGAGATGGGGCATTCTATTCACAGCACTTTTACGAGGGAA
AATCAACCTTATGTTTATGGAGATTACCCAATCTTCTTAGCAGAGATTGCTTCAACTACCAATGAAAATATTTTAACTGA
GACTTTGCTCAAAGAAAGCAATGATGAAAAGGAACGTTTTGCTCTTTTGAACCATTGGTTAGATAGTTTTCGAGGAACCG
TATTTCGTCAAAGTCAATTTGCTGAATTTGAACAAAAAATTCACGAAGTCGATGCTGAAGGTGAAGTATTGACGAGCGAA
TTTTTGAATTCTCTTTATGGCGAACTTAATGAAAAATATTATGGCTTATCTGCCAAAGAAAATCCTGAAATTCAGTTTGA
ATGGGCAAGAATTCCGCATTTCTATTATAATTTTTACGTTTTTCAATACGCAACAGGCTTTGCCGCAGCCTCATTTCTAG
CTGAAAAAGTGGTGCATGGTTCGGCTACTGACCGCCAAAATTATCTTGATTATTTAAAAGCTGGTTCATCAGCCTATCCA
CTAGACGTGATTGCAAAAGCTGGAGTTAATATGGAATCTACAGATTACTTAGAGTCTGCTTTTAAGCTTTTTGAAAAACG
TTTGAATGAATTAGAAAAATTAGTTGAAAAAGGAGTCCATCTTTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(113-182)

Peptidase family M3 (Peptidase_M3)

(203-582)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

64.06

100

0.641