Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   J0X00_RS13550 Genome accession   NZ_CP071708
Coordinates   1585791..1586336 (+) Length   181 a.a.
NCBI ID   WP_136487620.1    Uniprot ID   -
Organism   Vibrio sp. ABG19     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1580791..1591336
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J0X00_RS13535 (J0X00_13530) uvrA 1580898..1583720 (-) 2823 WP_282478250.1 excinuclease ABC subunit UvrA -
  J0X00_RS13540 (J0X00_13535) galU 1583856..1584725 (-) 870 WP_136487622.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  J0X00_RS13545 (J0X00_13540) qstR 1584856..1585506 (-) 651 WP_282478251.1 LuxR C-terminal-related transcriptional regulator Regulator
  J0X00_RS13550 (J0X00_13545) ssb 1585791..1586336 (+) 546 WP_136487620.1 single-stranded DNA-binding protein Machinery gene
  J0X00_RS13555 (J0X00_13550) csrD 1586721..1588727 (+) 2007 WP_218562421.1 RNase E specificity factor CsrD -
  J0X00_RS13560 (J0X00_13555) - 1588736..1590181 (+) 1446 WP_282478252.1 MSHA biogenesis protein MshI -
  J0X00_RS13565 (J0X00_13560) pilO 1590181..1590837 (+) 657 WP_136487618.1 type 4a pilus biogenesis protein PilO -
  J0X00_RS13570 (J0X00_13565) - 1590839..1591180 (+) 342 WP_282478295.1 MSHA biogenesis protein MshK -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 20138.29 Da        Isoelectric Point: 5.2358

>NTDB_id=547151 J0X00_RS13550 WP_136487620.1 1585791..1586336(+) (ssb) [Vibrio sp. ABG19]
MASRGVNKVILVGNLGGDPEVRYMPSGGAVANITVATSETWRDKATGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYTTEIVVQGYNGIMQMLGGRQQGGMPQQGGGMNQSSQQQGGWGQPQQPAMQQRQPQQPQQQQA
PQQSQPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=547151 J0X00_RS13550 WP_136487620.1 1585791..1586336(+) (ssb) [Vibrio sp. ABG19]
ATGGCAAGCCGTGGCGTGAATAAAGTAATTTTGGTTGGTAACCTGGGTGGCGATCCTGAAGTTCGCTACATGCCTAGTGG
TGGTGCGGTAGCAAACATCACAGTTGCTACGTCAGAAACATGGCGTGACAAAGCGACTGGTGAACAGCGCGAGAAAACCG
AATGGCACCGTGTTGCTCTGTTCGGCAAGCTGGCAGAAGTCGCTGGTGAATACCTGCGTAAAGGTTCACAGGTTTATATT
GAAGGCCAACTGCAGACTCGTAAATGGCAGGATCAATCTGGTCAGGATCGTTACACCACTGAAATCGTTGTTCAGGGTTA
TAACGGTATCATGCAGATGCTGGGTGGCCGTCAGCAAGGCGGTATGCCGCAACAAGGTGGTGGCATGAACCAGTCATCAC
AACAGCAGGGTGGTTGGGGTCAGCCTCAGCAACCGGCCATGCAGCAGCGCCAGCCACAACAGCCACAGCAGCAGCAGGCA
CCGCAGCAGTCGCAGCCGCAGTACAATGAGCCACCAATGGATTTTGATGACGACATCCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

86.339

100

0.873
  ssb Glaesserella parasuis strain SC1401

56.452

100

0.58
  ssb Neisseria meningitidis MC58

47.568

100

0.486
  ssb Neisseria gonorrhoeae MS11

47.568

100

0.486