Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   J0X00_RS13545 Genome accession   NZ_CP071708
Coordinates   1584856..1585506 (-) Length   216 a.a.
NCBI ID   WP_282478251.1    Uniprot ID   -
Organism   Vibrio sp. ABG19     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1579856..1590506
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J0X00_RS13535 (J0X00_13530) uvrA 1580898..1583720 (-) 2823 WP_282478250.1 excinuclease ABC subunit UvrA -
  J0X00_RS13540 (J0X00_13535) galU 1583856..1584725 (-) 870 WP_136487622.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  J0X00_RS13545 (J0X00_13540) qstR 1584856..1585506 (-) 651 WP_282478251.1 LuxR C-terminal-related transcriptional regulator Regulator
  J0X00_RS13550 (J0X00_13545) ssb 1585791..1586336 (+) 546 WP_136487620.1 single-stranded DNA-binding protein Machinery gene
  J0X00_RS13555 (J0X00_13550) csrD 1586721..1588727 (+) 2007 WP_218562421.1 RNase E specificity factor CsrD -
  J0X00_RS13560 (J0X00_13555) - 1588736..1590181 (+) 1446 WP_282478252.1 MSHA biogenesis protein MshI -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 25361.10 Da        Isoelectric Point: 9.6000

>NTDB_id=547150 J0X00_RS13545 WP_282478251.1 1584856..1585506(-) (qstR) [Vibrio sp. ABG19]
MSRTNYTRTIYLLCPDQNQPPAPSLQEALSRLPVDVPSIEPEQLLHEYKTDKHKILLFNYDQHQELRQRLSPLRLTNINL
ETILFNVNRRLRTEDLLSFGHLKGLFYRQDTPELIADNLAEIINGYNRLPRHVISQLLHHFRHVCQHHNTQASLNLTTRE
LEILRCLQTGKSNLRMAESLFISEFTVKSHLYQIFKKIAVKNRTQAVAWANQNLFS

Nucleotide


Download         Length: 651 bp        

>NTDB_id=547150 J0X00_RS13545 WP_282478251.1 1584856..1585506(-) (qstR) [Vibrio sp. ABG19]
ATGTCACGCACCAACTACACCCGCACGATTTACCTGCTGTGTCCGGATCAAAACCAGCCACCCGCCCCCTCGCTGCAAGA
GGCATTATCGCGTCTGCCAGTCGACGTACCCAGCATCGAACCCGAACAACTCCTGCACGAATACAAAACCGACAAACATA
AAATCCTGTTATTTAATTATGACCAACATCAGGAACTTCGCCAGCGCCTGAGCCCGTTACGGCTGACCAATATCAACCTG
GAAACCATACTGTTTAACGTCAACCGCCGGCTGCGCACCGAGGATTTGCTCTCATTCGGTCATCTTAAGGGGCTGTTTTA
TCGGCAAGACACGCCTGAACTGATTGCCGACAATCTGGCGGAAATCATCAATGGCTATAATCGCCTGCCGCGCCATGTCA
TTAGTCAGCTGCTGCATCATTTCCGTCACGTCTGTCAGCATCACAACACCCAGGCCAGCCTCAACCTGACCACGCGCGAG
CTGGAAATACTGCGCTGCCTGCAGACCGGCAAGTCCAACCTCAGAATGGCGGAAAGTCTGTTCATCAGTGAATTTACGGT
CAAATCGCATCTCTATCAGATCTTTAAAAAGATTGCGGTCAAAAACCGTACTCAGGCGGTCGCCTGGGCTAACCAGAATC
TGTTCTCATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio cholerae strain A1552

61.751

100

0.62
  qstR Vibrio campbellii strain DS40M4

48.848

100

0.491
  qstR Vibrio parahaemolyticus RIMD 2210633

47.465

100

0.477