Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   J0X00_RS12065 Genome accession   NZ_CP071708
Coordinates   1265288..1266811 (+) Length   507 a.a.
NCBI ID   WP_136487750.1    Uniprot ID   -
Organism   Vibrio sp. ABG19     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1260288..1271811
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J0X00_RS12050 (J0X00_12050) ilvD 1261005..1262846 (-) 1842 WP_136487747.1 dihydroxy-acid dehydratase -
  J0X00_RS12055 (J0X00_12055) ilvM 1262859..1263143 (-) 285 WP_136487748.1 acetolactate synthase 2 small subunit -
  J0X00_RS12060 (J0X00_12060) ilvG 1263156..1264802 (-) 1647 WP_136487749.1 acetolactate synthase 2 catalytic subunit -
  J0X00_RS12065 (J0X00_12065) comM 1265288..1266811 (+) 1524 WP_136487750.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  J0X00_RS12070 (J0X00_12070) - 1266925..1267863 (+) 939 WP_282478119.1 acyltransferase -
  J0X00_RS12075 (J0X00_12075) - 1268028..1268627 (-) 600 WP_282478120.1 thiol:disulfide interchange protein DsbA/DsbL -
  J0X00_RS12080 (J0X00_12080) - 1268660..1269646 (-) 987 WP_136487753.1 serine/threonine protein kinase -
  J0X00_RS12085 (J0X00_12085) ccoG 1269706..1271130 (-) 1425 WP_282478121.1 cytochrome c oxidase accessory protein CcoG -
  J0X00_RS12090 (J0X00_12090) - 1271380..1271646 (-) 267 WP_282478122.1 YihD family protein -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55177.17 Da        Isoelectric Point: 7.4332

>NTDB_id=547147 J0X00_RS12065 WP_136487750.1 1265288..1266811(+) (comM) [Vibrio sp. ABG19]
MGLAIIHSRASIGVQAPEVTVEVHISNGMPGFTLVGLPETTVKESRDRVRSAIINSKFEFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASEQIPDSKLNEHEFIGELALSGEIRSVKGVLPAALAANQARRHLVVPHYNGDQAALVGADRHRSAQTL
LEVCADLCGQQSLSLFQSEATESVPQANRDLQDIIGQHQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPQMSD
AEAMETASVASLTQQEINQHNWKLRPFRAPHHSSSMAALVGGGTIPRPGEISLAHNGLLFLDEMPEFERKVLDSLREPLE
SGEIIISRAQGKTRFPARFQLVGALNPSPTGYYEGNQARANPQMILRYLSRLSGPLLDRFDMSIEIPALPKGTLAHGGDR
GEATAMVKQRVQQAREVMLARSGKVNALLQSREIEQFCPLNQADAEFLENALHQLGLSIRAYHRIIKVARTIADLQGEAH
IQRVHLAEALGYRAMDRLLKQLTAQSV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=547147 J0X00_RS12065 WP_136487750.1 1265288..1266811(+) (comM) [Vibrio sp. ABG19]
ATGGGACTTGCGATTATTCACAGCCGGGCCAGTATCGGCGTTCAGGCTCCGGAGGTGACTGTGGAAGTGCACATCAGTAA
CGGTATGCCGGGTTTTACTCTGGTCGGACTGCCAGAGACCACTGTTAAAGAGTCGCGCGACCGGGTACGCAGTGCGATCA
TCAATTCCAAATTTGAATTTCCGGCCAAGCGGATTACCGTCAATCTGGCCCCGGCGGACCTGCCTAAAGAGGGCGGCCGT
TTTGACCTGCCGATTGCGCTCGGTATTCTCGCGGCCTCAGAGCAGATCCCGGACAGTAAGCTGAATGAGCATGAATTTAT
CGGTGAGCTGGCGCTGTCGGGAGAAATCCGCAGTGTAAAAGGTGTCCTGCCGGCGGCGCTCGCGGCTAATCAGGCCCGGC
GTCATTTGGTGGTGCCGCATTATAATGGCGATCAGGCGGCCTTAGTCGGCGCGGATCGCCATCGCTCGGCGCAGACTCTG
CTGGAGGTGTGCGCGGATTTGTGCGGTCAGCAGAGCTTGTCACTGTTTCAGAGTGAGGCGACCGAGAGTGTCCCGCAAGC
GAATCGCGACCTGCAGGATATAATTGGTCAGCATCAGGGGAAGCGCGCGCTGGAGATAGCGGCAGCCGGTAATCATAATT
TACTGTTCCTCGGCCCGCCCGGCACTGGCAAAACCATGCTGGCTTCGCGCTTGTGCGATCTGCTGCCGCAGATGAGCGAT
GCTGAAGCAATGGAGACGGCCTCGGTGGCGTCGCTGACCCAGCAGGAGATCAATCAGCATAATTGGAAACTGCGGCCGTT
TCGCGCCCCGCATCACTCGAGCTCGATGGCAGCGTTGGTCGGCGGCGGCACGATTCCGCGTCCGGGCGAAATCTCGCTGG
CGCATAACGGCCTGCTGTTTTTAGATGAAATGCCGGAGTTTGAACGTAAAGTGCTCGACTCGCTGCGTGAGCCGCTCGAG
TCGGGCGAAATCATTATTTCCCGCGCGCAGGGTAAGACCCGCTTTCCGGCCCGCTTTCAGCTGGTCGGAGCGCTCAATCC
CAGCCCGACCGGTTATTACGAAGGCAATCAGGCCCGTGCCAATCCGCAGATGATCCTGCGTTATCTGAGTCGTCTGTCCG
GTCCGCTGCTGGACCGCTTTGATATGTCGATTGAAATTCCGGCGCTGCCCAAAGGTACGCTGGCGCATGGTGGCGATCGC
GGTGAAGCGACCGCTATGGTCAAACAGCGCGTGCAGCAGGCGCGTGAAGTGATGCTGGCGCGCAGCGGCAAGGTCAATGC
TTTGCTGCAGAGTCGCGAAATCGAGCAATTTTGTCCGCTTAACCAGGCGGATGCGGAATTTCTCGAAAACGCGCTGCATC
AGTTAGGGCTGTCGATCCGGGCTTATCACCGTATCATTAAAGTGGCGCGCACCATTGCCGATCTGCAGGGAGAAGCGCAC
ATTCAGCGCGTGCATTTGGCGGAAGCGCTCGGTTACCGCGCTATGGACCGGTTACTTAAACAACTCACTGCGCAATCGGT
GTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

89.546

100

0.895
  comM Vibrio campbellii strain DS40M4

84.813

100

0.848
  comM Haemophilus influenzae Rd KW20

66.341

100

0.669
  comM Glaesserella parasuis strain SC1401

64.51

100

0.649
  comM Legionella pneumophila str. Paris

50

97.83

0.489
  comM Legionella pneumophila strain ERS1305867

50

97.83

0.489
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.195

100

0.432