Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   J0X00_RS09545 Genome accession   NZ_CP071708
Coordinates   738945..740162 (+) Length   405 a.a.
NCBI ID   WP_282477975.1    Uniprot ID   -
Organism   Vibrio sp. ABG19     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 733945..745162
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J0X00_RS09520 (J0X00_09520) fldB 734413..734934 (+) 522 WP_282477971.1 flavodoxin FldB -
  J0X00_RS09525 (J0X00_09525) ampD 734964..735512 (-) 549 WP_282477972.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  J0X00_RS09530 (J0X00_09530) nadC 735655..736542 (+) 888 WP_282477973.1 carboxylating nicotinate-nucleotide diphosphorylase -
  J0X00_RS09535 (J0X00_09535) - 736716..737126 (+) 411 WP_218562707.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  J0X00_RS09540 (J0X00_09540) pilB 737126..738934 (+) 1809 WP_282477974.1 ATPase, T2SS/T4P/T4SS family Machinery gene
  J0X00_RS09545 (J0X00_09545) pilC 738945..740162 (+) 1218 WP_282477975.1 type II secretion system F family protein Machinery gene
  J0X00_RS09550 (J0X00_09550) pilD 740213..741082 (+) 870 WP_218562705.1 A24 family peptidase Machinery gene
  J0X00_RS09555 (J0X00_09555) coaE 741085..741693 (+) 609 WP_218562704.1 dephospho-CoA kinase -
  J0X00_RS09560 (J0X00_09560) zapD 741725..742465 (+) 741 WP_136486084.1 cell division protein ZapD -
  J0X00_RS09565 (J0X00_09565) yacG 742502..742699 (+) 198 WP_136486081.1 DNA gyrase inhibitor YacG -
  J0X00_RS09570 (J0X00_09570) parC 742828..745101 (-) 2274 WP_136486079.1 DNA topoisomerase IV subunit A -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44699.34 Da        Isoelectric Point: 10.7969

>NTDB_id=547138 J0X00_RS09545 WP_282477975.1 738945..740162(+) (pilC) [Vibrio sp. ABG19]
MSNSRLQHYRWHGRDNQGRIRRGSMLALSEHEVRDSLQRQSIRIRSITPRPVSLLSRYRQRLNSRDITLLTRQLATMLAS
GVALLPALQLIATNHNKAAVSALLRSMLRSLESGMPLSAAMQASGHNFDRLYIDLLRSGELSGNLAQILERLAQYRETSE
QLRARVIKALLYPTIVINVAFAVTYLMLTLVIPEFERLFANLGSELPWFTRQVVAASHSLQTLGPWMVTAAALGAAGVCK
ARQAYPGLRLWLSRHSTRLPVLGPLLYKAALARFSRTLSTSLSSGLPLLTSLHSAAKTCGNAHLSHALDQIARDTASGMA
LHLTMRHCRIFPALMLQLVMIGEESGTLDEMLARIALSYENEVDNSVDNLGKILEPLLILLLGGVIGSLVVAMYLPIFNL
MSVLG

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=547138 J0X00_RS09545 WP_282477975.1 738945..740162(+) (pilC) [Vibrio sp. ABG19]
ATGTCGAACAGCAGATTACAACACTATCGTTGGCACGGCAGAGACAATCAGGGTCGGATACGGCGCGGCAGCATGCTGGC
TCTAAGCGAACACGAAGTCCGTGACAGCTTGCAACGTCAGTCGATCCGAATTCGCTCGATTACCCCGCGTCCCGTTTCAC
TGCTCAGCCGCTATCGCCAACGTCTGAACTCACGTGATATCACGTTATTAACCCGCCAGTTGGCCACTATGCTCGCCAGT
GGCGTGGCGCTCTTACCGGCGCTGCAGCTGATTGCGACCAACCATAACAAAGCAGCGGTATCAGCCTTGCTGCGCTCTAT
GCTACGCAGTCTGGAGAGCGGCATGCCGCTCTCAGCTGCGATGCAGGCCAGCGGTCACAACTTTGATCGCCTGTATATCG
ATCTGCTGCGCAGCGGCGAATTATCCGGAAACCTGGCACAAATTCTGGAACGCCTGGCACAATATCGTGAAACCAGCGAA
CAACTGCGCGCCAGGGTTATCAAGGCGCTGCTCTACCCAACCATAGTGATCAACGTCGCCTTCGCGGTCACTTATCTGAT
GCTGACCTTAGTGATTCCGGAGTTTGAACGCCTGTTCGCCAATTTGGGCAGCGAGTTGCCCTGGTTTACCCGCCAGGTCG
TCGCGGCCTCTCACTCACTGCAGACATTGGGGCCCTGGATGGTCACCGCCGCGGCACTGGGCGCCGCTGGCGTCTGTAAA
GCGCGCCAGGCTTACCCCGGGCTGCGGCTCTGGCTCAGCCGCCATAGTACTCGTCTGCCGGTGCTCGGGCCACTGCTGTA
TAAAGCCGCTCTGGCCCGTTTCAGCCGTACTCTGTCGACCAGCCTCAGTTCGGGGCTGCCGCTACTGACCAGCCTGCACT
CTGCAGCTAAAACCTGTGGGAATGCCCACCTGTCCCATGCTCTTGACCAGATCGCACGTGATACGGCCTCGGGGATGGCC
TTGCATCTGACGATGCGTCACTGCCGCATTTTTCCTGCGCTGATGCTACAACTGGTGATGATCGGTGAAGAGTCCGGCAC
TCTGGATGAGATGCTGGCCAGAATTGCGTTGAGTTATGAAAATGAGGTCGACAACAGCGTTGATAATCTGGGGAAAATCC
TCGAACCGCTGCTGATTTTACTGCTCGGTGGGGTGATTGGCAGCCTGGTGGTCGCAATGTATCTGCCAATCTTTAACTTG
ATGAGTGTATTAGGGTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-193)

Type II secretion system (T2SS), protein F (T2SSF)

(274-396)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

53.75

98.765

0.531
  pilC Vibrio campbellii strain DS40M4

51.493

99.259

0.511
  pilC Pseudomonas stutzeri DSM 10701

39.043

98.025

0.383
  pilC Acinetobacter baylyi ADP1

37.845

98.519

0.373
  pilC Acinetobacter baumannii D1279779

37.28

98.025

0.365