Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   LQT99_RS09010 Genome accession   NZ_CP088005
Coordinates   1842040..1842660 (-) Length   206 a.a.
NCBI ID   WP_007611720.1    Uniprot ID   A0AAI8HP04
Organism   Bacillus amyloliquefaciens strain bm     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1837040..1847660
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LQT99_RS08975 (LQT99_08965) - 1837904..1838338 (+) 435 WP_032875037.1 dUTP diphosphatase -
  LQT99_RS08980 (LQT99_08970) - 1838427..1838556 (-) 130 Protein_1715 DUF4177 domain-containing protein -
  LQT99_RS08985 (LQT99_08975) - 1838746..1839567 (+) 822 WP_032875039.1 poly-gamma-glutamate hydrolase family protein -
  LQT99_RS08990 (LQT99_08980) - 1839676..1839825 (+) 150 WP_007410334.1 hypothetical protein -
  LQT99_RS08995 (LQT99_08985) - 1839812..1840642 (+) 831 WP_007611716.1 prohibitin family protein -
  LQT99_RS09000 (LQT99_08990) - 1840670..1841119 (-) 450 WP_003154009.1 YndM family protein -
  LQT99_RS09005 (LQT99_08995) - 1841273..1841701 (+) 429 WP_032875041.1 hypothetical protein -
  LQT99_RS09010 (LQT99_09000) dinR/lexA 1842040..1842660 (-) 621 WP_007611720.1 transcriptional repressor LexA Regulator
  LQT99_RS09015 (LQT99_09005) yneA 1842817..1843128 (+) 312 WP_003154001.1 cell division suppressor protein YneA -
  LQT99_RS09020 (LQT99_09010) - 1843144..1843794 (+) 651 WP_003153998.1 recombinase family protein -
  LQT99_RS09025 (LQT99_09015) - 1843863..1844096 (+) 234 WP_003153997.1 DUF896 domain-containing protein -
  LQT99_RS09030 (LQT99_09020) recP/tkt 1844262..1846265 (+) 2004 WP_032875043.1 transketolase Machinery gene
  LQT99_RS09035 (LQT99_09025) sirA 1846417..1846863 (+) 447 WP_003153995.1 sporulation inhibitor of replication protein SirA -
  LQT99_RS09040 (LQT99_09030) - 1846949..1847167 (+) 219 WP_003153994.1 YneF family protein -
  LQT99_RS09045 (LQT99_09035) - 1847241..1847414 (-) 174 WP_012117647.1 aspartyl-phosphate phosphatase Spo0E family protein -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23046.64 Da        Isoelectric Point: 5.1645

>NTDB_id=547138 LQT99_RS09010 WP_007611720.1 1842040..1842660(-) (dinR/lexA) [Bacillus amyloliquefaciens strain bm]
MTKLSKRQLDILRFIKEEVKTKGYPPSVREIGEAVGLASSSTVHGHLARLETKGLIRRDPTKPRAIEVLDEEEVQIPKSQ
VVNVPVIGKVTAGIPITAVENIDEYFPLPDRMVPPGEHVFMLEIMGESMIDAGIFDKDYVIVKQQNTANNGEIVVAMTED
DEATVKRFYKEDNYVRLQPENPTMEPIILQNVSILGKVIGVFRAVH

Nucleotide


Download         Length: 621 bp        

>NTDB_id=547138 LQT99_RS09010 WP_007611720.1 1842040..1842660(-) (dinR/lexA) [Bacillus amyloliquefaciens strain bm]
ATGACGAAGCTATCAAAAAGGCAGCTTGATATCCTGCGTTTTATTAAAGAAGAGGTAAAAACGAAAGGATATCCGCCTTC
TGTAAGAGAGATAGGAGAAGCAGTAGGACTGGCTTCCAGTTCAACCGTGCACGGCCATTTGGCGCGGCTGGAGACAAAAG
GCCTGATCAGACGGGACCCTACTAAACCGAGGGCGATTGAGGTATTGGATGAAGAAGAAGTCCAAATTCCGAAAAGCCAG
GTCGTAAACGTTCCGGTCATCGGGAAAGTGACGGCGGGTATTCCGATTACGGCTGTTGAAAATATCGACGAGTATTTTCC
GCTTCCTGACCGGATGGTTCCTCCGGGCGAACATGTCTTTATGTTAGAAATCATGGGAGAAAGTATGATCGACGCCGGCA
TTTTTGACAAAGATTACGTCATCGTCAAACAGCAGAACACGGCCAATAACGGAGAAATCGTCGTAGCTATGACCGAAGAT
GATGAAGCGACGGTCAAGCGCTTCTATAAAGAAGACAATTATGTGCGGCTGCAGCCGGAAAATCCGACGATGGAGCCGAT
TATCCTGCAAAACGTAAGCATTTTGGGGAAAGTTATCGGCGTATTCAGAGCCGTACATTAA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(85-199)

LexA DNA binding domain (LexA_DNA_bind)

(1-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AAI8HP04

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

92.718

100

0.927