Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   J1N58_RS02405 Genome accession   NZ_CP071697
Coordinates   491954..492619 (+) Length   221 a.a.
NCBI ID   WP_024419560.1    Uniprot ID   -
Organism   Streptococcus suis strain 1112S     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 486954..497619
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J1N58_RS02380 (J1N58_02380) - 487165..488565 (+) 1401 WP_024377222.1 Cof-type HAD-IIB family hydrolase -
  J1N58_RS02385 (J1N58_02385) - 488567..488938 (+) 372 WP_029178257.1 S1 RNA-binding domain-containing protein -
  J1N58_RS02390 (J1N58_02390) cysK 488964..489890 (-) 927 WP_105096272.1 cysteine synthase A -
  J1N58_RS02395 (J1N58_02395) - 489980..490612 (-) 633 WP_161940868.1 YigZ family protein -
  J1N58_RS02400 (J1N58_02400) comFA/cflA 490669..491961 (+) 1293 WP_029997070.1 DEAD/DEAH box helicase Machinery gene
  J1N58_RS02405 (J1N58_02405) comFC/cflB 491954..492619 (+) 666 WP_024419560.1 ComF family protein Machinery gene
  J1N58_RS02410 (J1N58_02410) raiA 492697..493239 (+) 543 WP_014637536.1 ribosome-associated translation inhibitor RaiA -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25863.69 Da        Isoelectric Point: 8.4541

>NTDB_id=547040 J1N58_RS02405 WP_024419560.1 491954..492619(+) (comFC/cflB) [Streptococcus suis strain 1112S]
MSNCLLCNQTMKNKTRFSDLIFFSKEKSGICEECFSTFEEIAEQHCPHCYKNGESESCKDCQYWQNQGKPVVHTALYRYN
QAMAHYFSRYKFQGDYVLRNIFAKKLRIALSQFPDYTIVPIPISQKRLSERGFNQVEGLLDATNIPYQSLLGKYESQKQS
SKNRAERLEAKQMFYLLDEKEVPEKILLFDDIYTTGATIQLAVELFMKIGRKEIKTFSLTR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=547040 J1N58_RS02405 WP_024419560.1 491954..492619(+) (comFC/cflB) [Streptococcus suis strain 1112S]
ATGTCTAATTGTCTATTGTGTAATCAAACTATGAAAAATAAAACAAGATTTTCAGATCTCATCTTCTTTAGTAAAGAAAA
ATCGGGCATCTGTGAAGAATGTTTTTCAACTTTTGAGGAAATAGCAGAGCAACACTGTCCACATTGTTATAAAAACGGAG
AATCGGAAAGTTGCAAGGATTGTCAGTACTGGCAGAATCAAGGGAAACCAGTTGTCCACACAGCTTTGTACCGATATAAT
CAAGCGATGGCACATTATTTTAGTCGCTACAAATTTCAAGGAGACTATGTTTTAAGAAATATTTTTGCTAAAAAGCTTAG
AATAGCGTTAAGCCAATTTCCTGACTACACAATTGTTCCCATACCAATTAGTCAAAAACGACTATCAGAACGCGGTTTTA
ATCAAGTGGAAGGACTTTTGGATGCTACAAATATTCCCTATCAGTCCCTTCTTGGAAAGTATGAAAGCCAAAAACAATCA
TCAAAAAATCGTGCAGAGAGACTAGAAGCAAAACAGATGTTCTATCTATTAGATGAAAAAGAAGTGCCAGAAAAAATATT
ATTATTCGACGATATATATACAACAGGAGCCACAATCCAACTTGCTGTAGAACTTTTCATGAAAATTGGTAGGAAAGAAA
TCAAAACATTTTCACTAACACGATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis SK321

49.083

98.643

0.484
  comFC/cflB Streptococcus pneumoniae Rx1

49.083

98.643

0.484
  comFC/cflB Streptococcus pneumoniae D39

49.083

98.643

0.484
  comFC/cflB Streptococcus pneumoniae R6

49.083

98.643

0.484
  comFC/cflB Streptococcus pneumoniae TIGR4

49.083

98.643

0.484
  comFC/cflB Streptococcus mitis NCTC 12261

49.083

98.643

0.484