Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   RIV7116_RS03775 Genome accession   NC_019678
Coordinates   991329..991694 (+) Length   121 a.a.
NCBI ID   WP_015116941.1    Uniprot ID   -
Organism   Rivularia sp. PCC 7116     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 986329..996694
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RIV7116_RS03760 (Riv7116_0773) tilS 986647..987660 (+) 1014 WP_015116938.1 tRNA lysidine(34) synthetase TilS -
  RIV7116_RS03765 (Riv7116_0774) hmpF 987692..989428 (-) 1737 WP_015116939.1 pilus motility taxis protein HmpF -
  RIV7116_RS03770 (Riv7116_0775) - 989938..991164 (+) 1227 WP_015116940.1 response regulator -
  RIV7116_RS03775 (Riv7116_0776) pilH 991329..991694 (+) 366 WP_015116941.1 response regulator transcription factor Machinery gene
  RIV7116_RS03780 (Riv7116_0777) - 991708..992238 (+) 531 WP_015116942.1 chemotaxis protein CheW -
  RIV7116_RS03785 (Riv7116_0778) - 992256..995249 (+) 2994 WP_015116943.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13373.53 Da        Isoelectric Point: 5.1404

>NTDB_id=54674 RIV7116_RS03775 WP_015116941.1 991329..991694(+) (pilH) [Rivularia sp. PCC 7116]
MSTVLIVEDSIAQREMITDLLKASGLSVTHASDGLEALQTIQSICPDLVVLDIVMPRMNGYEVCRRLKSDPKTQNVPVVM
CSSKGEEFDRYWGMKQGADAYIAKPFQPTELVGTVKQLLRG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=54674 RIV7116_RS03775 WP_015116941.1 991329..991694(+) (pilH) [Rivularia sp. PCC 7116]
ATGAGTACAGTTCTGATTGTGGAAGATAGTATCGCACAAAGGGAGATGATTACAGACCTTTTGAAAGCAAGTGGCTTGTC
TGTCACTCACGCTTCAGATGGACTGGAGGCACTACAGACAATTCAAAGTATTTGTCCCGATTTAGTGGTCTTGGATATCG
TTATGCCCCGGATGAATGGTTACGAAGTTTGTCGTCGGCTCAAGTCCGATCCGAAAACCCAAAATGTACCGGTAGTCATG
TGCTCTTCTAAGGGTGAAGAATTTGACCGCTACTGGGGAATGAAGCAAGGGGCGGATGCTTATATCGCCAAACCGTTTCA
GCCGACGGAATTAGTCGGAACAGTCAAACAACTGCTGCGAGGATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

76.033

100

0.76
  pilG Acinetobacter baumannii strain A118

40.351

94.215

0.38
  micA Streptococcus pneumoniae Cp1015

38.333

99.174

0.38
  vicR Streptococcus mutans UA159

38.333

99.174

0.38
  pilL-C Synechocystis sp. PCC 6803

38.333

99.174

0.38

Multiple sequence alignment