Detailed information NTG0054648

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: H020_RS0101265
• Genome accession: NZ_AKVY01000001
• Coordinates: 232056..233054 (+)
• Length: 332 a.a.
• NCBI ID: WP_001808442.1
• Uniprot ID: Q97SR6
• Organism: Streptococcus pneumoniae TIGR4
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 227056..238054

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H020_RS0101235	-	227904..228599 (+)	696	WP_001144899.1	GNAT family N-acetyltransferase	-
H020_RS0101240	-	228611..229027 (+)	417	WP_000628406.1	GNAT family N-acetyltransferase	-
H020_RS13295	ltrA	229821..231077 (+)	1257	Protein_237	group II intron reverse transcriptase/maturase	-
H020_RS0101260	-	231829..231921 (-)	93	WP_000970381.1	type I toxin-antitoxin system Fst family toxin	-
H020_RS0101265	ruvB	232056..233054 (+)	999	WP_001808442.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
H020_RS0101270	-	233035..233607 (+)	573	WP_001098903.1	nucleotidyltransferase family protein	-
H020_RS0101275	-	233838..234596 (+)	759	WP_000466719.1	isoprenyl transferase	-
H020_RS0101280	-	234605..235408 (+)	804	WP_000189859.1	phosphatidate cytidylyltransferase	-
H020_RS0101285	eeP	235430..236689 (+)	1260	WP_000900658.1	RIP metalloprotease RseP	Regulator

Sequence

Protein

• Length: 332 a.a.
• Molecular weight: 37278.70 Da
• Isoelectric Point: 4.5018

>NTDB_id=54648 H020_RS0101265 WP_001808442.1 232056..233054(+) (ruvB) [Streptococcus pneumoniae TIGR4]
MSRILDNEMMGDEELVERTLRPQYLREYIGQDKVKDQLQIFIEAAKMRDEALDHVLLFGPPGLGKTTMAFVIANELGVNL
KQTSGPVIEKAGDLVAILNDLEPGDVLFIDEIHRLPMSVEEVLYSAMEDFYIDIMIGAGEGSRSVHLELPPFTLIGATTR
AGMLSNPLRARFGITGHMEYYAHADLTEIVERTADIFEMEITHEAASELALRSRGTPRIANRLLKRVRDFAQIMGNGVID
DVITDKALTMLDVDHEGLDYVDQKILRTMIEMYSGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIMRTRSGRVATAK
AYEHLGYEYSEK

Nucleotide

• Length: 999 bp

>NTDB_id=54648 H020_RS0101265 WP_001808442.1 232056..233054(+) (ruvB) [Streptococcus pneumoniae TIGR4]
ATGAGTAGAATTTTAGATAATGAGATGATGGGTGATGAGGAGTTAGTAGAACGCACGCTCCGTCCTCAGTATTTACGTGA
ATATATTGGTCAGGATAAGGTTAAGGATCAACTTCAGATCTTTATCGAAGCCGCTAAAATGCGGGATGAAGCGCTGGATC
ATGTGCTCTTATTTGGCCCTCCAGGGCTTGGGAAAACAACCATGGCTTTTGTCATTGCCAATGAACTGGGAGTCAATCTC
AAGCAAACGTCTGGTCCTGTTATCGAAAAAGCGGGTGATTTGGTAGCGATTTTGAATGATTTAGAGCCTGGAGATGTCCT
CTTTATTGACGAGATTCATCGCTTACCCATGTCAGTGGAAGAAGTGCTTTATAGTGCCATGGAGGACTTCTACATCGATA
TTATGATTGGGGCTGGTGAAGGCAGTCGCAGTGTTCATTTGGAGTTGCCTCCTTTTACCTTGATTGGTGCGACGACTCGG
GCTGGTATGCTCTCAAATCCACTACGGGCACGTTTTGGGATTACAGGTCATATGGAGTATTATGCTCATGCTGACTTGAC
AGAAATTGTCGAGCGGACGGCAGATATTTTTGAGATGGAAATCACCCATGAGGCAGCATCTGAGTTGGCCCTACGTAGTC
GTGGAACCCCTCGTATTGCCAATCGTCTCCTCAAGCGCGTGCGCGATTTTGCCCAGATAATGGGGAATGGGGTTATCGAT
GATGTTATTACCGATAAGGCTTTGACTATGCTGGATGTTGACCATGAAGGTTTGGACTATGTGGATCAAAAAATCCTTCG
CACCATGATTGAGATGTACAGTGGAGGACCTGTTGGTCTAGGAACTCTTTCTGTGAATATCGCCGAAGAGCGTGAGACAG
TTGAAGACATGTATGAGCCTTACTTGATTCAAAAAGGTTTTATCATGCGGACACGGTCTGGACGGGTGGCGACTGCTAAG
GCATATGAGCACTTAGGTTATGAATACAGTGAAAAATAA

Domains

Predicted by InterProScan.

• RuvB C-terminal winged helix domain (WHD_RuvB) (256-325)

• RuvB AAA lid domain (AAA_lid_4) (181-254)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (20-178)

3D structure

• AlphaFold DB: Q97SR6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Streptococcus pneumoniae TIGR4	100	100	1
ruvB	Streptococcus pneumoniae R6	99.096	100	0.991
ruvB	Streptococcus pneumoniae D39	99.096	100	0.991
ruvB	Bacillus subtilis subsp. subtilis str. 168	60.429	98.193	0.593
ruvB	Helicobacter pylori 26695	50.774	97.289	0.494
ruvB	Synechocystis sp. PCC 6803	49.84	94.277	0.47