Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   J2N86_RS02325 Genome accession   NZ_CP071527
Coordinates   524978..526489 (-) Length   503 a.a.
NCBI ID   WP_252580679.1    Uniprot ID   -
Organism   Legionella lytica strain PCM 2298     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 519978..531489
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J2N86_RS02300 (J2N86_02300) - 521128..521799 (-) 672 WP_252580670.1 TIGR00153 family protein -
  J2N86_RS02305 (J2N86_02305) - 521971..522759 (+) 789 WP_252580672.1 type II/III secretion system protein -
  J2N86_RS02310 (J2N86_02310) - 522828..523391 (+) 564 WP_252580673.1 YqgE/AlgH family protein -
  J2N86_RS02315 (J2N86_02315) ruvX 523384..523803 (+) 420 WP_252580675.1 Holliday junction resolvase RuvX -
  J2N86_RS02320 (J2N86_02320) - 523810..524703 (+) 894 WP_252580677.1 aspartate carbamoyltransferase catalytic subunit -
  J2N86_RS02325 (J2N86_02325) comM 524978..526489 (-) 1512 WP_252580679.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  J2N86_RS02330 (J2N86_02330) ubiK 526575..526838 (-) 264 WP_252580681.1 ubiquinone biosynthesis accessory factor UbiK -
  J2N86_RS02335 (J2N86_02335) - 526912..527253 (+) 342 WP_058533172.1 P-II family nitrogen regulator -
  J2N86_RS02340 (J2N86_02340) - 527341..527922 (-) 582 WP_252580683.1 5-formyltetrahydrofolate cyclo-ligase -
  J2N86_RS02345 (J2N86_02345) - 528224..528421 (+) 198 WP_252580685.1 PA3496 family putative envelope integrity protein -
  J2N86_RS02350 (J2N86_02350) - 528433..529239 (+) 807 WP_252580687.1 aminotransferase class IV -
  J2N86_RS02355 (J2N86_02355) - 529133..529894 (-) 762 WP_252580689.1 TVP38/TMEM64 family protein -

Sequence

Protein


Download         Length: 503 a.a.        Molecular weight: 54612.65 Da        Isoelectric Point: 7.8264

>NTDB_id=545993 J2N86_RS02325 WP_252580679.1 524978..526489(-) (comM) [Legionella lytica strain PCM 2298]
MNLAFTKTRSTVGILAHPVSVEVHLSNGIPSFAIVGLAETAIKESKDRVRSAIINSQFEFPCRKITVNLGPADLPKTGSG
FDLPIALGILAASNQIPQQSLLHHEFIGELALSGELRGISAIIPAVLAAHKSNNHLIIANANAVEASLTGHQNISTAHNL
REVCSYLCQGTSLHFLPQRPEQNTPQSELDWSDIKGQFHAKRAMEIAAAGGHSILLSGAPGSGKTMLAKRFNTLLPQLSE
TEALECAAISSIRGKLPDFAEWQSPPFRAPHHTASPVALVGGGNPPKPGEISLAHNGVLFLDELPEFNRHVLETLRQPLE
SGTICISRAAAQIEFPANFQLLAAMNPCPCGQWGNSQADCLCSPDRINRYLGKLSAPLLDRIDMQITIQALTQEELIKPN
TNPEKQSERIREQVIQVRAIQMERQNCLNANLSAKACEQVCNIGTKEQEFLSRVMSQLKLSARGYHRLLKVARTIADLGE
SASVNLAHLQQALSFKHTLQKPI

Nucleotide


Download         Length: 1512 bp        

>NTDB_id=545993 J2N86_RS02325 WP_252580679.1 524978..526489(-) (comM) [Legionella lytica strain PCM 2298]
ATGAATCTTGCGTTTACAAAAACACGTAGTACCGTGGGTATACTGGCGCACCCAGTATCTGTAGAAGTCCATTTATCGAA
TGGTATACCAAGCTTCGCGATTGTAGGCCTTGCCGAAACCGCAATCAAAGAAAGCAAAGACCGAGTACGCTCAGCCATTA
TTAACAGCCAATTTGAATTTCCCTGCCGAAAAATCACAGTCAACTTAGGCCCTGCAGATCTACCCAAAACAGGCAGTGGT
TTTGATTTACCCATAGCCTTAGGTATTCTCGCTGCTTCCAATCAAATCCCTCAACAAAGCTTATTGCACCATGAGTTTAT
TGGTGAGCTCGCATTAAGCGGCGAACTTCGTGGTATTTCAGCGATTATTCCTGCCGTCTTAGCTGCACATAAAAGTAATA
ACCATTTAATTATTGCCAATGCTAATGCCGTTGAAGCATCATTAACGGGCCATCAAAATATCAGCACTGCGCATAACTTA
CGTGAAGTATGTAGCTATCTATGCCAAGGAACTTCCTTACATTTCCTACCTCAGCGTCCTGAACAAAATACCCCCCAATC
GGAACTAGACTGGTCAGACATCAAAGGACAATTTCATGCCAAAAGGGCTATGGAAATTGCTGCCGCGGGCGGGCATAGTA
TTTTACTAAGTGGTGCACCAGGAAGTGGTAAAACGATGTTAGCCAAACGATTTAACACATTATTACCACAACTTTCAGAA
ACAGAAGCTTTAGAATGTGCCGCGATTAGCTCCATTCGTGGTAAGTTACCCGATTTTGCTGAATGGCAATCACCGCCATT
TCGCGCACCTCATCATACCGCCTCACCTGTTGCTTTAGTAGGTGGTGGCAATCCACCAAAACCTGGGGAAATATCCCTAG
CTCATAATGGCGTATTATTTTTAGATGAGCTACCTGAATTTAACCGCCATGTCCTAGAAACCTTAAGGCAACCTTTAGAA
TCGGGAACGATTTGCATTTCCAGAGCCGCAGCACAAATAGAATTTCCAGCAAATTTTCAATTACTAGCAGCCATGAATCC
GTGCCCTTGTGGACAATGGGGAAATAGCCAAGCAGACTGTTTATGCAGCCCCGATCGTATTAATCGCTATTTAGGCAAAC
TCTCCGCCCCACTCCTAGACCGTATTGATATGCAAATCACCATCCAAGCCCTAACCCAAGAAGAATTAATTAAACCCAAC
ACCAATCCAGAAAAACAAAGCGAGCGAATTCGTGAGCAAGTGATCCAAGTACGCGCAATACAAATGGAACGACAAAATTG
CCTCAATGCCAATTTAAGTGCAAAAGCCTGTGAACAAGTATGCAACATTGGTACTAAGGAACAGGAATTCTTAAGTCGAG
TAATGAGCCAACTCAAATTATCTGCTCGTGGCTATCATCGTTTACTTAAAGTCGCGCGAACAATTGCTGATCTGGGTGAA
AGTGCTTCGGTAAATTTAGCTCATTTACAACAGGCGTTGTCGTTTAAGCATACCTTGCAAAAGCCAATATAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-395)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-496)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Legionella pneumophila str. Paris

80.279

99.801

0.801
  comM Legionella pneumophila strain ERS1305867

80.279

99.801

0.801
  comM Haemophilus influenzae Rd KW20

51.2

99.404

0.509
  comM Vibrio cholerae strain A1552

50.806

98.608

0.501
  comM Vibrio campbellii strain DS40M4

50.202

98.608

0.495
  comM Glaesserella parasuis strain SC1401

48.497

99.205

0.481
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.685

99.205

0.423