Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   I8J32_RS03765 Genome accession   NZ_CP071518
Coordinates   833698..835212 (+) Length   504 a.a.
NCBI ID   WP_200615037.1    Uniprot ID   -
Organism   Agrilutibacter solisilvae strain R19     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 828698..840212
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I8J32_RS03745 (I8J32_003745) speE 829867..830718 (+) 852 WP_200615045.1 polyamine aminopropyltransferase -
  I8J32_RS03750 (I8J32_003750) - 830859..832727 (+) 1869 WP_200615043.1 GGDEF domain-containing protein -
  I8J32_RS03755 (I8J32_003755) - 832753..833091 (-) 339 WP_200615041.1 P-II family nitrogen regulator -
  I8J32_RS03760 (I8J32_003760) - 833412..833687 (+) 276 WP_200615039.1 ubiquinone biosynthesis accessory factor UbiK -
  I8J32_RS03765 (I8J32_003765) comM 833698..835212 (+) 1515 WP_200615037.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  I8J32_RS03770 (I8J32_003770) - 835475..836107 (+) 633 WP_200615036.1 DUF4136 domain-containing protein -
  I8J32_RS03775 (I8J32_003775) - 836220..837428 (-) 1209 WP_200615034.1 putative peptide maturation dehydrogenase -
  I8J32_RS03780 (I8J32_003780) - 837765..838112 (+) 348 WP_200615032.1 NHLP-related RiPP peptide -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 53249.89 Da        Isoelectric Point: 8.9118

>NTDB_id=545910 I8J32_RS03765 WP_200615037.1 833698..835212(+) (comM) [Agrilutibacter solisilvae strain R19]
MNLALVHGRARTGVRAPAVRVEVHLSGGLPRMSIVGLPEAAVRESKDRVRAAITCAQYEFPARVITINLAPADLPKEGGR
FDLPIALGILAASGQIPLDALSQYEFLGELGLTGELRAVDGVLPAALAAADAGRKLVVPAGNGAEAALATRVEVSTARTL
LEVCGMLDGRRALPTAVRLPTSTHSGPDMADVRGQIQARRALEIAAAGGHHLLLVGPPGCGKTLLASRLPGLLPEASEDE
ALESAAIASVSGRGLDPARWRERPFRAPHHTASAVALVGGGSQPRPGEISLAHHGVLFLDELPEWDRRALEVLREPLESG
VVTISRAARQSEFPARFQLVAAMNPCPCGWAGDASGRCRCGVDAIRRYRSRISGPLLDRIDLHVEVPRLPPAQLRHNAPS
GESSAQVRERVLRARAAQQARGGKANARLDQAETNATCRLAAGDDALLERAVDTLQLTARSLHRILRVARTIADLDGRTG
IESVHLSEAIGYRRADWAPGAGAG

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=545910 I8J32_RS03765 WP_200615037.1 833698..835212(+) (comM) [Agrilutibacter solisilvae strain R19]
ATGAACCTGGCACTCGTGCACGGACGTGCGCGAACGGGCGTCCGTGCGCCCGCAGTGCGGGTGGAAGTCCATCTCTCCGG
TGGACTGCCCCGCATGTCCATCGTCGGCCTGCCGGAAGCGGCCGTGCGCGAGTCCAAGGACCGCGTGCGCGCGGCCATCA
CCTGTGCGCAGTACGAATTTCCCGCACGCGTGATCACGATCAATCTCGCCCCGGCCGACCTGCCCAAGGAAGGCGGGCGC
TTCGATCTCCCCATCGCGCTGGGCATCCTCGCGGCCAGTGGCCAGATCCCGCTGGACGCGCTGTCGCAGTACGAGTTCCT
CGGCGAACTCGGCCTGACCGGCGAGCTGCGGGCGGTGGACGGCGTGCTGCCCGCGGCGTTGGCCGCGGCCGACGCCGGCC
GCAAGCTGGTGGTCCCGGCGGGCAACGGCGCCGAGGCGGCGCTGGCCACGCGGGTCGAGGTCAGCACCGCGCGCACGCTG
CTGGAGGTGTGCGGCATGCTCGACGGGCGTCGTGCCCTGCCCACCGCGGTCCGACTTCCGACCAGCACGCACAGCGGCCC
GGACATGGCGGACGTGCGCGGACAGATCCAGGCGCGCCGGGCGCTGGAGATCGCCGCCGCGGGTGGGCACCACCTGCTGC
TGGTCGGCCCACCCGGCTGTGGCAAGACGCTGCTGGCCTCGCGCCTGCCGGGGCTGTTGCCGGAAGCCAGCGAGGATGAA
GCACTGGAATCGGCCGCCATCGCCTCGGTAAGCGGCCGCGGCCTGGATCCGGCGCGCTGGCGCGAGCGCCCCTTCCGGGC
GCCGCACCACACCGCGAGCGCGGTGGCGCTGGTCGGCGGCGGCTCGCAGCCCCGGCCAGGCGAGATTTCGCTGGCCCACC
ACGGGGTGCTGTTCCTGGACGAGTTGCCCGAGTGGGACCGCCGGGCCCTTGAGGTGCTGCGCGAACCGCTGGAGTCGGGC
GTGGTGACCATTTCGCGCGCGGCGCGGCAAAGCGAGTTCCCGGCCCGCTTCCAGCTGGTGGCCGCGATGAATCCCTGCCC
CTGTGGCTGGGCCGGTGATGCCAGCGGACGCTGCCGCTGCGGCGTCGACGCCATCCGCCGGTATCGCAGCCGCATTTCCG
GGCCGCTGCTGGACCGCATCGACCTGCACGTGGAAGTCCCGCGGCTGCCGCCCGCGCAACTGCGGCACAACGCCCCGTCT
GGCGAATCCAGCGCGCAGGTGCGCGAGCGGGTGCTGCGGGCACGGGCCGCGCAGCAGGCGCGGGGCGGCAAGGCGAATGC
CCGGCTCGACCAGGCCGAGACCAATGCCACCTGCCGGCTGGCGGCCGGCGACGACGCCCTGCTGGAGCGCGCCGTGGACA
CCCTGCAGCTGACGGCCCGATCGCTGCATCGCATCCTGCGGGTGGCGCGCACGATCGCCGACCTGGACGGCCGGACCGGG
ATCGAATCGGTCCACCTCTCCGAGGCCATCGGATACCGCCGCGCGGACTGGGCGCCGGGCGCCGGTGCCGGCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(188-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

56.112

99.008

0.556
  comM Vibrio cholerae strain A1552

55.422

98.81

0.548
  comM Haemophilus influenzae Rd KW20

54

99.206

0.536
  comM Glaesserella parasuis strain SC1401

53.479

99.802

0.534
  comM Legionella pneumophila str. Paris

51.205

98.81

0.506
  comM Legionella pneumophila strain ERS1305867

51.205

98.81

0.506
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.443

100

0.466