Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   JYB88_RS16690 Genome accession   NZ_CP071504
Coordinates   3772254..3773774 (+) Length   506 a.a.
NCBI ID   WP_207324846.1    Uniprot ID   A0A974XJZ5
Organism   Shewanella cyperi strain FJAT-53726     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3767254..3778774
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JYB88_RS16670 (JYB88_16670) - 3768021..3768410 (-) 390 WP_207324842.1 YkgJ family cysteine cluster protein -
  JYB88_RS16675 (JYB88_16675) - 3768537..3769379 (+) 843 WP_207324843.1 GGDEF domain-containing protein -
  JYB88_RS16680 (JYB88_16680) - 3769376..3771169 (-) 1794 WP_207324844.1 diguanylate cyclase domain-containing protein -
  JYB88_RS16685 (JYB88_16685) - 3771166..3772164 (-) 999 WP_207324845.1 ABC transporter substrate-binding protein -
  JYB88_RS16690 (JYB88_16690) comM 3772254..3773774 (+) 1521 WP_207324846.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  JYB88_RS16695 (JYB88_16695) - 3773945..3776623 (+) 2679 WP_228289650.1 cytochrome c peroxidase -
  JYB88_RS16700 (JYB88_16700) - 3776637..3777164 (+) 528 WP_207324847.1 O-acetyl-ADP-ribose deacetylase -
  JYB88_RS16705 (JYB88_16705) - 3777375..3778481 (+) 1107 WP_207324848.1 hypothetical protein -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54634.99 Da        Isoelectric Point: 8.6062

>NTDB_id=545777 JYB88_RS16690 WP_207324846.1 3772254..3773774(+) (comM) [Shewanella cyperi strain FJAT-53726]
MGIACVATRASLGVEAPAVMVEVHLSNGLPAFNLVGLPEASVKEARERVRSALVNAGFEFPMRRITVNLAPADLPKQGGR
YDLPIALGILAASGQIPLNSLKEREFVGELALTGEIRPCQGLLPVIIAARQAGRSLILPQDNRLDAELVGYPHIHLCCQL
PQLTAFLHGQQQLPGLSIGTEWLDEAPPHPGPCLSEVIGQYQAKQALEIAAAGNHNLLMLGPPGTGKTMLASRIMSLLPP
LNYEEALEVAALHSVAGMSIAPQKFQQRPFRAPHHTSSAISLVGGGSIPRPGEISLAHRGVLFLDELPEFPRRVLDCLRE
PMETGEVVISRAAAKLTFASRFQLIAAMNPSPCGSSDADSRASIEQINRYLARLSGPFLDRFDLSIEVPRLPAGTLSKQT
STGATSAELAQRVRRARETQLARAGVLNSDLSGKQLQQAGFTAADLQFLEQSVNRLGLSVRSFHRLQRVARTIADLDQSI
QVERRHLAQALGYRAMDRLLAGLRQH

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=545777 JYB88_RS16690 WP_207324846.1 3772254..3773774(+) (comM) [Shewanella cyperi strain FJAT-53726]
ATGGGGATCGCCTGTGTTGCCACCCGGGCCAGTTTGGGCGTCGAGGCGCCGGCCGTGATGGTGGAGGTGCATTTGAGCAA
TGGCTTGCCCGCATTCAATCTGGTGGGCCTGCCTGAGGCCTCGGTCAAGGAAGCCCGCGAACGGGTGCGCAGCGCCCTGG
TCAATGCCGGCTTCGAGTTCCCGATGCGCCGCATCACTGTCAATCTGGCGCCGGCAGACTTGCCCAAGCAAGGTGGCCGC
TACGATCTGCCCATCGCCCTTGGCATACTTGCCGCCTCGGGCCAGATCCCGCTCAACAGCCTCAAGGAGCGGGAGTTTGT
CGGCGAGCTGGCCCTCACAGGTGAAATCCGTCCCTGCCAGGGGCTGTTGCCTGTGATCATCGCCGCCCGCCAGGCGGGTC
GCAGCCTGATATTGCCCCAGGATAACCGCCTCGATGCCGAGCTGGTGGGCTATCCCCATATTCACCTGTGTTGCCAATTG
CCACAGCTGACGGCCTTTCTCCATGGCCAGCAGCAGCTGCCGGGACTGAGTATCGGCACCGAATGGCTGGATGAGGCGCC
GCCACACCCGGGCCCGTGTCTCAGCGAAGTCATAGGCCAGTATCAGGCCAAACAGGCGCTGGAAATTGCCGCCGCTGGCA
ATCACAATTTATTGATGCTGGGTCCCCCGGGTACGGGCAAGACCATGTTGGCCAGCAGGATCATGTCGCTGCTGCCACCA
CTTAACTACGAGGAAGCGCTGGAGGTGGCGGCCCTGCATTCGGTGGCGGGCATGAGCATAGCGCCGCAGAAATTCCAGCA
GCGGCCATTCCGGGCACCGCACCACACCAGTTCGGCCATATCCCTGGTGGGTGGCGGCAGTATTCCCAGACCCGGTGAAA
TATCCCTCGCCCACCGCGGTGTGTTGTTTCTCGACGAGTTGCCGGAATTTCCCCGCCGGGTACTGGATTGTCTGCGCGAA
CCCATGGAGACCGGCGAGGTGGTCATTTCCCGCGCCGCAGCCAAACTCACCTTTGCCAGCCGCTTTCAGCTGATTGCCGC
CATGAACCCCAGCCCCTGTGGCAGCAGCGATGCCGACAGCCGCGCCAGCATTGAACAGATAAACCGTTATCTGGCGCGTC
TGTCGGGCCCCTTTCTCGACAGATTCGACCTGTCCATCGAGGTGCCGCGCCTGCCCGCCGGCACCCTCAGCAAACAGACA
AGCACAGGTGCCACCTCGGCCGAACTGGCCCAGCGGGTGCGTCGCGCCCGGGAGACCCAGCTGGCCCGGGCCGGGGTGCT
CAACAGTGACCTGTCCGGCAAGCAGTTGCAGCAGGCGGGCTTTACGGCCGCTGATCTGCAATTCCTGGAGCAGAGCGTCA
ATCGCCTCGGGCTGTCGGTGCGCAGCTTTCACCGCCTGCAGCGGGTGGCGCGCACCATAGCCGACCTGGACCAGAGTATT
CAGGTGGAGCGCCGTCATTTGGCCCAGGCCCTGGGCTACCGCGCCATGGACCGCTTGCTGGCGGGCTTGAGGCAACATTA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(404-494)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-393)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.751

100

0.573
  comM Vibrio campbellii strain DS40M4

56.238

99.802

0.561
  comM Haemophilus influenzae Rd KW20

55.796

100

0.561
  comM Glaesserella parasuis strain SC1401

55.03

100

0.551
  comM Legionella pneumophila str. Paris

47.036

100

0.47
  comM Legionella pneumophila strain ERS1305867

47.036

100

0.47
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.461

98.221

0.427