Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   J1G53_RS03110 Genome accession   NZ_CP071490
Coordinates   638021..639283 (+) Length   420 a.a.
NCBI ID   WP_026917118.1    Uniprot ID   -
Organism   Glaesserella parasuis strain GHP1808     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 633021..644283
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J1G53_RS03085 (J1G53_03085) - 633215..635770 (-) 2556 WP_021119495.1 penicillin-binding protein 1A -
  J1G53_RS03090 (J1G53_03090) comA 635924..636601 (+) 678 WP_021113429.1 hypothetical protein Machinery gene
  J1G53_RS03095 (J1G53_03095) comB 636577..637098 (+) 522 WP_021113427.1 hypothetical protein Machinery gene
  J1G53_RS03100 (J1G53_03100) comC 637095..637625 (+) 531 WP_075592411.1 ATPase Machinery gene
  J1G53_RS03105 (J1G53_03105) comD 637625..638011 (+) 387 WP_010785954.1 pilus assembly protein PilP Machinery gene
  J1G53_RS03110 (J1G53_03110) comE 638021..639283 (+) 1263 WP_026917118.1 type IV pilus secretin PilQ Machinery gene
  J1G53_RS03115 (J1G53_03115) nusB 639362..639775 (+) 414 WP_010785952.1 transcription antitermination factor NusB -
  J1G53_RS03120 (J1G53_03120) thiL 639784..640752 (+) 969 WP_021110497.1 thiamine-phosphate kinase -
  J1G53_RS03125 (J1G53_03125) - 640755..641225 (+) 471 WP_005712497.1 phosphatidylglycerophosphatase A -
  J1G53_RS03130 (J1G53_03130) - 641227..641856 (+) 630 WP_010785950.1 LysE family transporter -
  J1G53_RS03135 (J1G53_03135) trxA 642153..642467 (+) 315 WP_005712493.1 thioredoxin -
  J1G53_RS03140 (J1G53_03140) - 643012..643524 (+) 513 WP_414458132.1 hypothetical protein -
  J1G53_RS03145 (J1G53_03145) - 643850..644269 (-) 420 WP_005714137.1 hotdog fold thioesterase -

Sequence

Protein


Download         Length: 420 a.a.        Molecular weight: 47095.07 Da        Isoelectric Point: 8.9232

>NTDB_id=545642 J1G53_RS03110 WP_026917118.1 638021..639283(+) (comE) [Glaesserella parasuis strain GHP1808]
MRYLFLLFFATFPVLANQQISLSIRNAPTAEIISYLAEETGKNITISDEIKDTKNFRVEKSHFDEILNSLIKTHQLNLKK
ENGIYYIHQAQEHKQHTTAQLVNALPKLITKTIKLHYSKASEVIESLTKGQGNLLSENGYLHFDDRSNSIIVKDSAASVK
NFTQLIESLDKPTEQIAIEARIVTISSEHLQQLGVRWGLFSPNENHYKLAGNLEGNGLTTNNLNVNFPVNPSASVALQIA
AINSRVLHLELTALESENNIEIIASPRLLTTDKKPASIKQGTEIPYAMYSKKKEITDIEFREAVLGLEVTPHISKQNQIL
LDLAISQNSPNNQMNNMMATIDKQEINTQVLAKHGETIVLGGIFQHLIAKGEDKVPLLGSIPVIKRLFSQNRDKISKREL
VIFVTPYIVKSEKMGAEKQK

Nucleotide


Download         Length: 1263 bp        

>NTDB_id=545642 J1G53_RS03110 WP_026917118.1 638021..639283(+) (comE) [Glaesserella parasuis strain GHP1808]
ATGCGTTATTTATTCCTGCTATTCTTTGCTACTTTTCCTGTATTAGCAAACCAACAAATTTCACTTTCGATAAGAAATGC
CCCAACGGCAGAGATTATTAGTTATTTGGCGGAGGAAACTGGAAAGAATATTACAATTTCGGATGAAATTAAAGATACAA
AAAATTTCAGAGTAGAAAAAAGCCATTTTGATGAGATATTAAATAGTTTAATCAAAACACATCAATTAAATTTAAAAAAA
GAAAATGGCATTTACTATATTCATCAAGCCCAAGAACATAAACAACATACTACGGCACAATTAGTTAATGCTCTGCCTAA
ATTAATCACCAAAACAATCAAGTTACACTATTCCAAAGCCTCTGAAGTAATAGAGTCTTTGACAAAAGGGCAAGGCAACT
TGCTATCAGAGAATGGTTATCTTCATTTTGATGATCGCAGTAATAGTATTATCGTCAAAGACAGTGCCGCCTCAGTTAAA
AACTTTACTCAACTTATCGAAAGCCTAGATAAACCAACGGAACAAATTGCAATTGAAGCCCGAATTGTCACGATCAGCAG
TGAACATTTACAACAACTTGGCGTGCGTTGGGGCTTATTTTCCCCTAACGAAAATCACTACAAATTGGCAGGAAACTTAG
AGGGCAACGGATTAACTACCAACAACTTAAACGTAAATTTTCCAGTAAATCCGTCCGCTTCCGTTGCCTTACAAATTGCC
GCTATCAACAGCCGTGTACTTCATTTAGAACTCACCGCATTAGAGAGCGAAAATAACATTGAGATCATTGCAAGCCCTCG
CTTACTCACAACAGATAAAAAACCAGCGAGTATCAAACAAGGTACAGAGATTCCTTATGCAATGTACAGTAAGAAAAAGG
AAATCACCGATATTGAATTTCGTGAAGCGGTTTTGGGGCTAGAAGTCACGCCACATATTTCTAAACAAAATCAGATTTTG
TTAGATCTTGCCATTAGCCAAAATTCGCCAAATAACCAGATGAACAATATGATGGCAACGATTGATAAACAAGAAATTAA
TACACAAGTCCTTGCTAAACACGGCGAAACCATCGTATTAGGCGGTATTTTTCAACATCTGATCGCCAAAGGCGAAGATA
AAGTCCCGCTGTTAGGCAGTATCCCCGTGATTAAACGCTTATTTAGCCAAAACCGAGATAAAATCTCTAAACGGGAGCTG
GTTATTTTTGTTACGCCTTATATTGTAAAATCTGAAAAAATGGGAGCGGAAAAGCAGAAATAA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(110-175)

Bacterial type II and III secretion system protein (Secretin)

(253-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Glaesserella parasuis strain SC1401

97.381

100

0.974
  comE Haemophilus influenzae Rd KW20

52.706

100

0.533
  comE Haemophilus influenzae 86-028NP

51.765

100

0.524
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

37.681

98.571

0.371
  pilQ Vibrio cholerae strain A1552

37.681

98.571

0.371
  pilQ Vibrio campbellii strain DS40M4

36.493

100

0.367