Detailed information    

insolico Bioinformatically predicted

Overview

Name   comD   Type   Machinery gene
Locus tag   J1G53_RS03105 Genome accession   NZ_CP071490
Coordinates   637625..638011 (+) Length   128 a.a.
NCBI ID   WP_010785954.1    Uniprot ID   -
Organism   Glaesserella parasuis strain GHP1808     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 632625..643011
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J1G53_RS03085 (J1G53_03085) - 633215..635770 (-) 2556 WP_021119495.1 penicillin-binding protein 1A -
  J1G53_RS03090 (J1G53_03090) comA 635924..636601 (+) 678 WP_021113429.1 hypothetical protein Machinery gene
  J1G53_RS03095 (J1G53_03095) comB 636577..637098 (+) 522 WP_021113427.1 hypothetical protein Machinery gene
  J1G53_RS03100 (J1G53_03100) comC 637095..637625 (+) 531 WP_075592411.1 ATPase Machinery gene
  J1G53_RS03105 (J1G53_03105) comD 637625..638011 (+) 387 WP_010785954.1 pilus assembly protein PilP Machinery gene
  J1G53_RS03110 (J1G53_03110) comE 638021..639283 (+) 1263 WP_026917118.1 type IV pilus secretin PilQ Machinery gene
  J1G53_RS03115 (J1G53_03115) nusB 639362..639775 (+) 414 WP_010785952.1 transcription antitermination factor NusB -
  J1G53_RS03120 (J1G53_03120) thiL 639784..640752 (+) 969 WP_021110497.1 thiamine-phosphate kinase -
  J1G53_RS03125 (J1G53_03125) - 640755..641225 (+) 471 WP_005712497.1 phosphatidylglycerophosphatase A -
  J1G53_RS03130 (J1G53_03130) - 641227..641856 (+) 630 WP_010785950.1 LysE family transporter -
  J1G53_RS03135 (J1G53_03135) trxA 642153..642467 (+) 315 WP_005712493.1 thioredoxin -

Sequence

Protein


Download         Length: 128 a.a.        Molecular weight: 15034.18 Da        Isoelectric Point: 5.1643

>NTDB_id=545641 J1G53_RS03105 WP_010785954.1 637625..638011(+) (comD) [Glaesserella parasuis strain GHP1808]
MRLCFFYFVFLSAVTMADPFYAKENTQDQPQTAKDQNKTTACTPTEKVNEIHLTTDFDKLQLIGIIQIDDKIRAIFIDDK
KQLIDLYPNDYLSHSFIQIKEIDFKSVSYIDWQKTENCQSPKLFTSKF

Nucleotide


Download         Length: 387 bp        

>NTDB_id=545641 J1G53_RS03105 WP_010785954.1 637625..638011(+) (comD) [Glaesserella parasuis strain GHP1808]
ATGCGATTATGCTTTTTCTATTTTGTCTTTCTAAGTGCTGTTACTATGGCAGATCCTTTTTATGCCAAGGAAAATACCCA
AGATCAGCCACAAACGGCAAAAGATCAAAACAAAACGACCGCTTGTACGCCAACAGAGAAGGTGAACGAAATTCACCTCA
CCACAGATTTTGATAAATTACAGCTTATCGGCATTATTCAGATCGACGATAAAATTCGAGCGATTTTTATAGATGATAAA
AAACAGCTTATAGATTTATATCCTAACGACTATTTAAGCCATTCCTTTATTCAAATTAAAGAGATTGATTTTAAATCGGT
TAGTTATATTGATTGGCAAAAAACAGAAAATTGCCAATCCCCTAAATTGTTTACTTCAAAATTTTAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(13-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comD Glaesserella parasuis strain SC1401

92.035

88.281

0.812