Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   J1G50_RS10840 Genome accession   NZ_CP071489
Coordinates   2208538..2209665 (+) Length   375 a.a.
NCBI ID   WP_207356793.1    Uniprot ID   -
Organism   Glaesserella parasuis strain YHP1815     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2191013..2220393 2208538..2209665 within 0


Gene organization within MGE regions


Location: 2191013..2220393
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J1G50_RS10720 (J1G50_10720) - 2192437..2193012 (+) 576 WP_075630754.1 Panacea domain-containing protein -
  J1G50_RS10725 (J1G50_10725) - 2193009..2193467 (+) 459 WP_075630753.1 hypothetical protein -
  J1G50_RS10730 (J1G50_10730) - 2193576..2194298 (+) 723 WP_075630752.1 hypothetical protein -
  J1G50_RS10735 (J1G50_10735) - 2194362..2195570 (-) 1209 WP_082259179.1 IS256 family transposase -
  J1G50_RS10740 (J1G50_10740) - 2195848..2196054 (+) 207 WP_164689329.1 helix-turn-helix transcriptional regulator -
  J1G50_RS10745 (J1G50_10745) - 2196071..2196460 (+) 390 WP_160405517.1 hypothetical protein -
  J1G50_RS10750 (J1G50_10750) - 2196444..2196746 (+) 303 WP_160405515.1 hypothetical protein -
  J1G50_RS10755 (J1G50_10755) - 2196736..2197209 (+) 474 WP_160405513.1 hypothetical protein -
  J1G50_RS10760 (J1G50_10760) - 2197197..2197634 (+) 438 WP_234885786.1 terminase small subunit -
  J1G50_RS10765 (J1G50_10765) - 2197689..2197940 (+) 252 Protein_2082 Rha family transcriptional regulator -
  J1G50_RS10770 (J1G50_10770) - 2197955..2198713 (+) 759 WP_005713034.1 phage antirepressor Ant -
  J1G50_RS10775 (J1G50_10775) - 2198761..2199711 (+) 951 WP_160405509.1 host cell division inhibitor Icd-like protein -
  J1G50_RS10780 (J1G50_10780) - 2199704..2199976 (+) 273 WP_078208515.1 hypothetical protein -
  J1G50_RS10785 (J1G50_10785) - 2199969..2200277 (+) 309 WP_164689331.1 hypothetical protein -
  J1G50_RS10790 (J1G50_10790) - 2200270..2200605 (+) 336 WP_075630742.1 hypothetical protein -
  J1G50_RS10795 (J1G50_10795) - 2200602..2201009 (+) 408 WP_075630741.1 hypothetical protein -
  J1G50_RS10800 (J1G50_10800) - 2200993..2203179 (+) 2187 WP_160405507.1 DUF927 domain-containing protein -
  J1G50_RS10805 (J1G50_10805) - 2203801..2204076 (+) 276 WP_075630739.1 type II toxin-antitoxin system RelE family toxin -
  J1G50_RS10810 (J1G50_10810) - 2204115..2204495 (+) 381 WP_075630738.1 helix-turn-helix domain-containing protein -
  J1G50_RS10815 (J1G50_10815) - 2205314..2205832 (-) 519 WP_160421905.1 hypothetical protein -
  J1G50_RS10820 (J1G50_10820) - 2205792..2205935 (-) 144 WP_010787341.1 hypothetical protein -
  J1G50_RS10825 (J1G50_10825) rfaD 2206027..2206953 (-) 927 WP_021110191.1 ADP-glyceromanno-heptose 6-epimerase -
  J1G50_RS10830 (J1G50_10830) def 2206965..2207477 (-) 513 WP_005712670.1 peptide deformylase -
  J1G50_RS10835 (J1G50_10835) - 2207695..2208513 (+) 819 WP_021114360.1 Bro-N domain-containing protein -
  J1G50_RS10840 (J1G50_10840) dprA 2208538..2209665 (+) 1128 WP_207356793.1 DNA-processing protein DprA Machinery gene
  J1G50_RS10845 (J1G50_10845) - 2209718..2210554 (+) 837 WP_010787337.1 heme/hemin ABC transporter substrate-binding protein -
  J1G50_RS10850 (J1G50_10850) - 2210554..2211540 (+) 987 WP_207356794.1 FecCD family ABC transporter permease -
  J1G50_RS10855 (J1G50_10855) - 2211540..2212328 (+) 789 WP_010787335.1 heme ABC transporter ATP-binding protein -
  J1G50_RS10860 (J1G50_10860) - 2213021..2217748 (+) 4728 WP_207356795.1 YadA-like family protein -
  J1G50_RS10865 (J1G50_10865) - 2217812..2218095 (-) 284 Protein_2102 transposase -
  J1G50_RS10870 (J1G50_10870) - 2218086..2218244 (-) 159 Protein_2103 IS256 family transposase -
  J1G50_RS10875 (J1G50_10875) rpoH 2218486..2219433 (-) 948 WP_005711000.1 RNA polymerase sigma factor RpoH -
  J1G50_RS10880 (J1G50_10880) xerC 2219491..2220393 (-) 903 WP_080513250.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 41755.75 Da        Isoelectric Point: 5.2496

>NTDB_id=545623 J1G50_RS10840 WP_207356793.1 2208538..2209665(+) (dprA) [Glaesserella parasuis strain YHP1815]
MTHLTKLLALLQVPQLGAQRIGRLLSEVDFGEFCQYDKTALKQMGWNERQIQRWFNPEHKWIDQALQWAEQDQQRILTLF
DEDYPFLLKQISTAPPVLFVRGNVESLSLPQIAIVGSRDYSHYGEHWAGHFSAELVKHQLAVTSGLAIGIDGFCHQRAAN
ENGITIAVLGSGLDQVYPARHKKLAEQIVETSGALVSEFFPSQPPIAENFPRRNRIISGLSLGTLVIEATVNSGSLITAR
YALEQGREVFALPNAVQNPYSEGCHKLIKEGALLVENVEDILEAIAWQWQSVHIQPSLFDTKPKQAVKSEPKFAKNLPEL
TACQQQLFEQISLEPISVDDLAKATDMAVETALIELLNLELLGVVKQVSGGYVIT

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=545623 J1G50_RS10840 WP_207356793.1 2208538..2209665(+) (dprA) [Glaesserella parasuis strain YHP1815]
ATGACACATCTCACAAAATTATTAGCCCTGTTACAAGTGCCACAGCTTGGCGCACAACGTATCGGGCGGTTACTCTCGGA
AGTGGACTTTGGCGAATTTTGTCAATATGACAAAACCGCATTAAAGCAAATGGGCTGGAATGAACGGCAAATTCAGCGTT
GGTTTAATCCTGAGCATAAATGGATCGATCAGGCGTTGCAATGGGCGGAACAGGATCAGCAACGGATTTTAACTTTATTT
GACGAAGATTATCCTTTTTTATTGAAGCAGATCAGTACTGCTCCCCCTGTGCTTTTTGTGCGTGGGAATGTTGAAAGTTT
ATCGTTACCGCAGATAGCTATCGTCGGCAGTCGAGATTACTCCCACTATGGCGAACACTGGGCAGGGCATTTTTCGGCGG
AATTAGTGAAACATCAACTTGCTGTCACTAGTGGTTTAGCCATAGGCATAGACGGATTTTGTCATCAGCGTGCGGCCAAT
GAAAACGGGATTACTATTGCGGTTTTAGGCAGTGGTTTAGACCAAGTTTACCCTGCTCGCCACAAAAAACTTGCTGAACA
AATCGTTGAAACAAGCGGTGCGTTAGTGTCGGAATTTTTCCCTAGCCAGCCACCGATTGCTGAGAATTTCCCTAGACGAA
ATCGTATTATCAGCGGATTATCGCTAGGAACATTGGTTATTGAAGCAACAGTGAATAGTGGCTCGCTCATTACTGCCCGT
TATGCGTTAGAGCAAGGGAGAGAAGTCTTTGCATTGCCGAACGCAGTACAAAACCCTTATAGCGAAGGGTGCCATAAATT
GATTAAAGAAGGAGCATTACTGGTTGAAAATGTTGAAGATATTTTAGAAGCGATTGCGTGGCAATGGCAATCAGTGCATA
TTCAACCAAGCCTGTTTGATACGAAACCTAAACAAGCGGTGAAATCCGAACCCAAATTTGCAAAAAATCTACCTGAACTG
ACCGCTTGTCAGCAACAATTGTTTGAACAGATTAGCCTTGAGCCGATCAGCGTTGATGATCTTGCCAAAGCAACAGATAT
GGCGGTAGAAACCGCATTAATTGAGCTGTTAAATTTGGAGTTGTTGGGTGTTGTGAAGCAGGTGAGTGGGGGGTATGTAA
TCACTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(69-276)

DprA winged helix domain (DprA_WH)

(313-371)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Glaesserella parasuis strain SC1401

98.933

100

0.989
  dprA Haemophilus influenzae Rd KW20

53.235

90.667

0.483
  dprA Vibrio campbellii strain DS40M4

47.185

99.467

0.469
  dprA Vibrio cholerae strain A1552

43.883

100

0.44
  dprA Legionella pneumophila strain ERS1305867

39.153

100

0.395
  dprA Neisseria gonorrhoeae MS11

42.994

83.733

0.36