Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   J1G50_RS07810 Genome accession   NZ_CP071489
Coordinates   1583631..1584893 (-) Length   420 a.a.
NCBI ID   WP_160404856.1    Uniprot ID   A0AAX1M6L4
Organism   Glaesserella parasuis strain YHP1815     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1578631..1589893
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J1G50_RS07780 (J1G50_07780) - 1579255..1580109 (-) 855 WP_420485377.1 IS256 family transposase, variant Zn-binding type -
  J1G50_RS07785 (J1G50_07785) trxA 1580447..1580761 (-) 315 WP_015940165.1 thioredoxin -
  J1G50_RS07790 (J1G50_07790) - 1581058..1581687 (-) 630 WP_160404850.1 LysE family transporter -
  J1G50_RS07795 (J1G50_07795) - 1581689..1582159 (-) 471 WP_005712497.1 phosphatidylglycerophosphatase A -
  J1G50_RS07800 (J1G50_07800) thiL 1582162..1583130 (-) 969 WP_160404852.1 thiamine-phosphate kinase -
  J1G50_RS07805 (J1G50_07805) nusB 1583139..1583552 (-) 414 WP_160404854.1 transcription antitermination factor NusB -
  J1G50_RS07810 (J1G50_07810) comE 1583631..1584893 (-) 1263 WP_160404856.1 type IV pilus secretin PilQ Machinery gene
  J1G50_RS07815 (J1G50_07815) comD 1584903..1585244 (-) 342 WP_021114623.1 pilus assembly, PilP family protein Machinery gene
  J1G50_RS07820 (J1G50_07820) comC 1585289..1585819 (-) 531 WP_021119496.1 hypothetical protein Machinery gene
  J1G50_RS07825 (J1G50_07825) comB 1585816..1586337 (-) 522 WP_160404857.1 hypothetical protein Machinery gene
  J1G50_RS07830 (J1G50_07830) comA 1586313..1586990 (-) 678 WP_160404859.1 competence protein ComA Machinery gene
  J1G50_RS07835 (J1G50_07835) - 1587144..1589699 (+) 2556 WP_164689396.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 420 a.a.        Molecular weight: 47038.92 Da        Isoelectric Point: 7.7191

>NTDB_id=545615 J1G50_RS07810 WP_160404856.1 1583631..1584893(-) (comE) [Glaesserella parasuis strain YHP1815]
MRYLFLLFFATFPVLANQQISLSIRNAPTAEIISYLAEETGKNITISDEIKDTKNFRVEKSHFDEILNSLIKTHQLNLKK
ENGIYYIHQAQEHKQHTTAQLVNALPKLITKTIKLHYSKASEVIESLTKGQGNLLSESGYLHFDDRSNSIIVKDSAASVK
NFTQLIESLDKPTEQIAIEARIVTISSEHLQQLGVRWGLFSPNENHYKLAGNLEGNGLTTNNLNVNFPVNPSASVALQIA
AINGRVLDLELTALESENNIEIIASPRLLTTDKKPASIKQGTEIPYAMYSKKEEITDIEFREAVLGLEVTPHISKQNQIL
LDLAISQNSPNNQINNTMVTIDKQEIKTQVLAKHGETIVLGGIFQHLIAKGEDKVPLLGSIPVIKRLFSQNRDRISKREL
VIFVTPYIVKSEKMGAEKQK

Nucleotide


Download         Length: 1263 bp        

>NTDB_id=545615 J1G50_RS07810 WP_160404856.1 1583631..1584893(-) (comE) [Glaesserella parasuis strain YHP1815]
ATGCGTTATTTATTTCTGCTCTTCTTTGCTACTTTTCCTGTATTAGCAAACCAACAAATTTCACTTTCGATAAGAAATGC
CCCAACGGCAGAGATTATTAGTTATTTGGCGGAGGAAACGGGAAAGAATATTACAATTTCGGATGAAATTAAAGATACAA
AAAATTTCAGAGTAGAAAAAAGCCATTTTGATGAGATATTAAATAGTTTAATCAAAACACATCAATTAAATTTAAAAAAA
GAAAATGGCATTTACTATATTCATCAAGCCCAAGAACATAAACAACATACTACGGCACAATTAGTTAATGCGCTGCCTAA
ATTAATCACCAAAACAATCAAGTTACACTATTCCAAAGCCTCTGAAGTTATAGAGTCTTTAACAAAAGGGCAAGGCAATT
TACTATCAGAAAGTGGTTATCTTCACTTTGATGATCGCAGTAATAGCATTATCGTCAAAGACAGTGCCGCCTCAGTTAAA
AACTTTACTCAACTTATCGAAAGCCTAGATAAACCAACGGAACAAATTGCAATTGAAGCCCGAATTGTCACTATCAGCAG
TGAACATTTACAACAACTTGGCGTGCGTTGGGGCTTATTTTCCCCTAACGAAAATCACTACAAATTGGCAGGCAATTTAG
AAGGCAACGGATTAACTACCAACAACTTAAACGTAAATTTTCCAGTAAATCCGTCCGCTTCTGTTGCCTTACAAATTGCT
GCAATCAACGGTCGTGTACTTGATTTAGAACTTACTGCATTAGAAAGCGAAAATAACATAGAGATCATTGCAAGCCCTCG
CTTACTCACAACAGATAAAAAACCAGCGAGTATCAAACAAGGTACAGAAATTCCTTATGCAATGTACAGTAAGAAAGAGG
AAATCACCGATATTGAATTTCGTGAAGCCGTTTTGGGGTTAGAGGTCACGCCACATATTTCTAAACAAAATCAGATTTTG
TTAGACCTCGCTATCAGCCAAAATTCGCCCAATAACCAAATAAATAATACAATGGTGACAATTGATAAACAGGAAATCAA
AACGCAAGTTCTAGCTAAACACGGTGAAACCATCGTATTAGGCGGTATTTTTCAACATCTGATCGCCAAAGGCGAAGATA
AAGTACCGCTGTTAGGCAGTATCCCCGTGATTAAACGCTTATTTAGCCAAAATCGAGATAGAATCTCTAAACGAGAATTA
GTGATTTTTGTTACGCCTTATATTGTAAAATCTGAAAAAATGGGAGCGGAAAAGCAGAAATAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(253-410)

Bacterial type II/III secretion system short domain (Secretin_N)

(110-175)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Glaesserella parasuis strain SC1401

98.571

100

0.986
  comE Haemophilus influenzae Rd KW20

53.412

100

0.54
  comE Haemophilus influenzae 86-028NP

52.471

100

0.531
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

38.164

98.571

0.376
  pilQ Vibrio cholerae strain A1552

38.164

98.571

0.376
  pilQ Vibrio campbellii strain DS40M4

36.493

100

0.367