Detailed information    

insolico Bioinformatically predicted

Overview

Name   comD   Type   Machinery gene
Locus tag   J1G50_RS07815 Genome accession   NZ_CP071489
Coordinates   1584903..1585244 (-) Length   113 a.a.
NCBI ID   WP_021114623.1    Uniprot ID   -
Organism   Glaesserella parasuis strain YHP1815     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1579903..1590244
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J1G50_RS07785 (J1G50_07785) trxA 1580447..1580761 (-) 315 WP_015940165.1 thioredoxin -
  J1G50_RS07790 (J1G50_07790) - 1581058..1581687 (-) 630 WP_160404850.1 LysE family transporter -
  J1G50_RS07795 (J1G50_07795) - 1581689..1582159 (-) 471 WP_005712497.1 phosphatidylglycerophosphatase A -
  J1G50_RS07800 (J1G50_07800) thiL 1582162..1583130 (-) 969 WP_160404852.1 thiamine-phosphate kinase -
  J1G50_RS07805 (J1G50_07805) nusB 1583139..1583552 (-) 414 WP_160404854.1 transcription antitermination factor NusB -
  J1G50_RS07810 (J1G50_07810) comE 1583631..1584893 (-) 1263 WP_160404856.1 type IV pilus secretin PilQ Machinery gene
  J1G50_RS07815 (J1G50_07815) comD 1584903..1585244 (-) 342 WP_021114623.1 pilus assembly, PilP family protein Machinery gene
  J1G50_RS07820 (J1G50_07820) comC 1585289..1585819 (-) 531 WP_021119496.1 hypothetical protein Machinery gene
  J1G50_RS07825 (J1G50_07825) comB 1585816..1586337 (-) 522 WP_160404857.1 hypothetical protein Machinery gene
  J1G50_RS07830 (J1G50_07830) comA 1586313..1586990 (-) 678 WP_160404859.1 competence protein ComA Machinery gene
  J1G50_RS07835 (J1G50_07835) - 1587144..1589699 (+) 2556 WP_164689396.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 13165.91 Da        Isoelectric Point: 4.8436

>NTDB_id=545616 J1G50_RS07815 WP_021114623.1 1584903..1585244(-) (comD) [Glaesserella parasuis strain YHP1815]
MADPFYAKDNAQDQPHTAKDQNKTTACMPTDKVNEINLTTDFDKLQLIGIIQIDDKIRAIFLDDKKQLIDLYPDDYLSHS
FIQIKEINFKSVSYIDWQKTENCQSPKLFTSKF

Nucleotide


Download         Length: 342 bp        

>NTDB_id=545616 J1G50_RS07815 WP_021114623.1 1584903..1585244(-) (comD) [Glaesserella parasuis strain YHP1815]
ATGGCAGATCCTTTTTATGCTAAGGATAACGCCCAAGATCAGCCACACACGGCAAAAGATCAAAACAAAACGACCGCTTG
TATGCCAACGGACAAGGTGAATGAAATTAATCTCACCACAGATTTTGATAAATTACAGCTTATCGGCATTATTCAGATCG
ATGATAAAATCCGAGCCATTTTTTTAGATGATAAAAAACAGCTTATAGATTTATACCCTGACGACTATTTAAGCCATTCC
TTTATTCAAATTAAAGAAATTAATTTTAAATCTGTTAGTTATATTGATTGGCAAAAAACAGAAAATTGCCAATCTCCTAA
ATTGTTTACTTCAAAATTTTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comD Glaesserella parasuis strain SC1401

98.23

100

0.982