Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   J1G47_RS10550 Genome accession   NZ_CP071487
Coordinates   2092820..2094082 (+) Length   420 a.a.
NCBI ID   WP_026917118.1    Uniprot ID   -
Organism   Glaesserella parasuis strain YHP1818     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2087820..2099082
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J1G47_RS10525 (J1G47_10525) - 2088014..2090569 (-) 2556 WP_035498541.1 penicillin-binding protein 1A -
  J1G47_RS10530 (J1G47_10530) comA 2090723..2091400 (+) 678 WP_207326625.1 competence protein ComA Machinery gene
  J1G47_RS10535 (J1G47_10535) comB 2091376..2091897 (+) 522 WP_021112068.1 hypothetical protein Machinery gene
  J1G47_RS10540 (J1G47_10540) comC 2091894..2092424 (+) 531 WP_015940159.1 hypothetical protein Machinery gene
  J1G47_RS10545 (J1G47_10545) comD 2092469..2092810 (+) 342 WP_232422128.1 hypothetical protein Machinery gene
  J1G47_RS10550 (J1G47_10550) comE 2092820..2094082 (+) 1263 WP_026917118.1 type IV pilus secretin PilQ Machinery gene
  J1G47_RS10555 (J1G47_10555) nusB 2094161..2094574 (+) 414 WP_005712500.1 transcription antitermination factor NusB -
  J1G47_RS10560 (J1G47_10560) thiL 2094583..2095551 (+) 969 WP_016528250.1 thiamine-phosphate kinase -
  J1G47_RS10565 (J1G47_10565) - 2095554..2096024 (+) 471 WP_005712497.1 phosphatidylglycerophosphatase A -
  J1G47_RS10570 (J1G47_10570) - 2096026..2096655 (+) 630 WP_005712495.1 LysE family transporter -
  J1G47_RS10575 (J1G47_10575) trxA 2096952..2097266 (+) 315 WP_015940165.1 thioredoxin -
  J1G47_RS11945 - 2097811..2098098 (+) 288 WP_016528248.1 hypothetical protein -
  J1G47_RS10585 (J1G47_10585) - 2098650..2099069 (-) 420 WP_010785949.1 hotdog fold thioesterase -

Sequence

Protein


Download         Length: 420 a.a.        Molecular weight: 47095.07 Da        Isoelectric Point: 8.9232

>NTDB_id=545592 J1G47_RS10550 WP_026917118.1 2092820..2094082(+) (comE) [Glaesserella parasuis strain YHP1818]
MRYLFLLFFATFPVLANQQISLSIRNAPTAEIISYLAEETGKNITISDEIKDTKNFRVEKSHFDEILNSLIKTHQLNLKK
ENGIYYIHQAQEHKQHTTAQLVNALPKLITKTIKLHYSKASEVIESLTKGQGNLLSENGYLHFDDRSNSIIVKDSAASVK
NFTQLIESLDKPTEQIAIEARIVTISSEHLQQLGVRWGLFSPNENHYKLAGNLEGNGLTTNNLNVNFPVNPSASVALQIA
AINSRVLHLELTALESENNIEIIASPRLLTTDKKPASIKQGTEIPYAMYSKKKEITDIEFREAVLGLEVTPHISKQNQIL
LDLAISQNSPNNQMNNMMATIDKQEINTQVLAKHGETIVLGGIFQHLIAKGEDKVPLLGSIPVIKRLFSQNRDKISKREL
VIFVTPYIVKSEKMGAEKQK

Nucleotide


Download         Length: 1263 bp        

>NTDB_id=545592 J1G47_RS10550 WP_026917118.1 2092820..2094082(+) (comE) [Glaesserella parasuis strain YHP1818]
ATGCGTTATTTATTCCTGCTATTCTTTGCTACTTTTCCTGTATTAGCAAACCAACAAATTTCACTTTCGATAAGAAATGC
CCCAACGGCAGAGATTATTAGTTATTTGGCGGAGGAAACTGGAAAGAATATTACAATTTCGGATGAAATTAAAGATACAA
AAAATTTCAGAGTAGAAAAAAGCCATTTTGATGAGATATTAAATAGTTTAATCAAAACACATCAATTAAATTTAAAAAAA
GAAAATGGCATTTACTATATTCATCAAGCCCAAGAACATAAACAACATACTACGGCACAATTAGTTAATGCTCTGCCTAA
ATTAATCACCAAAACAATCAAGTTACACTATTCCAAAGCCTCTGAAGTAATAGAGTCTTTGACAAAAGGGCAAGGCAACT
TGCTATCAGAGAATGGTTATCTTCATTTTGATGATCGCAGTAATAGTATTATCGTCAAAGACAGTGCCGCCTCAGTTAAA
AACTTTACTCAACTTATCGAAAGCCTAGATAAACCAACGGAACAAATTGCAATTGAAGCCCGAATTGTCACGATCAGCAG
TGAACATTTACAACAACTTGGCGTGCGTTGGGGCTTATTTTCCCCTAACGAAAATCACTACAAATTGGCAGGAAACTTAG
AGGGCAACGGATTAACTACCAACAACTTAAACGTAAATTTTCCAGTAAATCCGTCCGCTTCCGTTGCCTTACAAATTGCC
GCTATCAACAGCCGTGTACTTCATTTAGAACTCACCGCATTAGAGAGCGAAAATAACATTGAGATCATTGCAAGCCCTCG
CTTACTCACAACAGATAAAAAACCAGCGAGTATCAAACAAGGTACAGAGATTCCTTATGCAATGTACAGTAAGAAAAAGG
AAATCACCGATATTGAATTTCGTGAAGCGGTTTTGGGGCTAGAAGTCACGCCACATATTTCTAAACAAAATCAGATTTTG
TTAGATCTTGCCATTAGCCAAAATTCGCCAAATAACCAGATGAACAATATGATGGCAACGATTGATAAACAAGAAATTAA
TACACAAGTCCTTGCTAAACACGGCGAAACCATCGTATTAGGCGGTATTTTTCAACATCTGATCGCCAAAGGCGAAGATA
AAGTCCCGCTGTTAGGCAGTATCCCCGTGATTAAACGCTTATTTAGCCAAAACCGAGATAAAATCTCTAAACGGGAGCTG
GTTATTTTTGTTACGCCTTATATTGTAAAATCTGAAAAAATGGGAGCGGAAAAGCAGAAATAA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(110-175)

Bacterial type II and III secretion system protein (Secretin)

(253-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Glaesserella parasuis strain SC1401

97.381

100

0.974
  comE Haemophilus influenzae Rd KW20

52.706

100

0.533
  comE Haemophilus influenzae 86-028NP

51.765

100

0.524
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

37.681

98.571

0.371
  pilQ Vibrio cholerae strain A1552

37.681

98.571

0.371
  pilQ Vibrio campbellii strain DS40M4

36.493

100

0.367