Detailed information    

insolico Bioinformatically predicted

Overview

Name   comD   Type   Machinery gene
Locus tag   J1G47_RS10545 Genome accession   NZ_CP071487
Coordinates   2092469..2092810 (+) Length   113 a.a.
NCBI ID   WP_232422128.1    Uniprot ID   -
Organism   Glaesserella parasuis strain YHP1818     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2087469..2097810
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J1G47_RS10525 (J1G47_10525) - 2088014..2090569 (-) 2556 WP_035498541.1 penicillin-binding protein 1A -
  J1G47_RS10530 (J1G47_10530) comA 2090723..2091400 (+) 678 WP_207326625.1 competence protein ComA Machinery gene
  J1G47_RS10535 (J1G47_10535) comB 2091376..2091897 (+) 522 WP_021112068.1 hypothetical protein Machinery gene
  J1G47_RS10540 (J1G47_10540) comC 2091894..2092424 (+) 531 WP_015940159.1 hypothetical protein Machinery gene
  J1G47_RS10545 (J1G47_10545) comD 2092469..2092810 (+) 342 WP_232422128.1 hypothetical protein Machinery gene
  J1G47_RS10550 (J1G47_10550) comE 2092820..2094082 (+) 1263 WP_026917118.1 type IV pilus secretin PilQ Machinery gene
  J1G47_RS10555 (J1G47_10555) nusB 2094161..2094574 (+) 414 WP_005712500.1 transcription antitermination factor NusB -
  J1G47_RS10560 (J1G47_10560) thiL 2094583..2095551 (+) 969 WP_016528250.1 thiamine-phosphate kinase -
  J1G47_RS10565 (J1G47_10565) - 2095554..2096024 (+) 471 WP_005712497.1 phosphatidylglycerophosphatase A -
  J1G47_RS10570 (J1G47_10570) - 2096026..2096655 (+) 630 WP_005712495.1 LysE family transporter -
  J1G47_RS10575 (J1G47_10575) trxA 2096952..2097266 (+) 315 WP_015940165.1 thioredoxin -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 13176.92 Da        Isoelectric Point: 5.1438

>NTDB_id=545591 J1G47_RS10545 WP_232422128.1 2092469..2092810(+) (comD) [Glaesserella parasuis strain YHP1818]
MADPFYAKENAQDQPQTAKDQNKTTACTPTEKVNEIHLTTDFDKLQLIGIIQIDDKIRAIFIDDKKQLIDLYPDDYLSHS
FIQIKEINFKSVSYINWQKTENCQSPKLFTSKF

Nucleotide


Download         Length: 342 bp        

>NTDB_id=545591 J1G47_RS10545 WP_232422128.1 2092469..2092810(+) (comD) [Glaesserella parasuis strain YHP1818]
ATGGCAGATCCTTTTTATGCCAAGGAAAATGCCCAAGATCAGCCACAAACGGCAAAAGATCAAAACAAAACGACCGCTTG
TACGCCAACAGAGAAGGTGAACGAAATTCACCTCACCACAGATTTTGATAAATTACAGCTTATCGGCATTATTCAGATCG
ACGATAAAATCCGAGCGATTTTTATAGATGATAAAAAACAGCTTATAGATTTATACCCTGACGACTATTTAAGCCATTCC
TTTATTCAAATTAAAGAAATTAATTTTAAATCTGTTAGTTATATTAATTGGCAAAAAACAGAAAATTGCCAATCCCCTAA
ATTGTTTACTTCAAAATTTTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comD Glaesserella parasuis strain SC1401

93.805

100

0.938