Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   J1C60_RS16840 Genome accession   NZ_CP071409
Coordinates   3718713..3719252 (-) Length   179 a.a.
NCBI ID   WP_128175703.1    Uniprot ID   A0A443IG73
Organism   [Pantoea] beijingensis strain JZB2120001     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3713713..3724252
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J1C60_RS18630 - 3715670..3718336 (-) 2667 WP_128175701.1 type III effector HrpK domain-containing protein -
  J1C60_RS16840 ssb 3718713..3719252 (-) 540 WP_128175703.1 single-stranded DNA-binding protein SSB1 Machinery gene
  J1C60_RS16845 uvrA 3719481..3722309 (+) 2829 WP_128175706.1 excinuclease ABC subunit UvrA -
  J1C60_RS16850 - 3722564..3722899 (-) 336 WP_128175708.1 MmcQ/YjbR family DNA-binding protein -
  J1C60_RS16855 - 3722901..3723317 (-) 417 WP_128175710.1 secondary thiamine-phosphate synthase enzyme YjbQ -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 19175.13 Da        Isoelectric Point: 5.2456

>NTDB_id=545270 J1C60_RS16840 WP_128175703.1 3718713..3719252(-) (ssb) [[Pantoea] beijingensis strain JZB2120001]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGETKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGALQTRKWTDQAGVEKYTTEVVVNVGGTMQMLGGRQGGGAPAAGQSNNNNGWGQPQQPQAPQGGNNNQFSGGAQSRPQQ
SSAPANNEPPMDFDDDIPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=545270 J1C60_RS16840 WP_128175703.1 3718713..3719252(-) (ssb) [[Pantoea] beijingensis strain JZB2120001]
ATGGCCAGCAGAGGCGTTAACAAAGTGATTCTTGTCGGAAATCTGGGTCAGGATCCGGAAGTCCGCTATATGCCAAATGG
GGGTGCAGTTGCCAACATTACGCTGGCCACGTCCGAAAGCTGGCGTGACAAGCAGACCGGCGAAACCAAAGAGAAAACCG
AGTGGCACCGCGTTGTGCTGTTCGGCAAATTGGCTGAAGTGGCGGGAGAATATCTGCGCAAAGGCTCGCAAGTTTATATC
GAAGGTGCACTCCAGACGCGTAAATGGACCGATCAGGCTGGCGTAGAAAAATACACCACGGAAGTCGTGGTCAATGTCGG
TGGCACCATGCAGATGCTGGGTGGACGTCAGGGCGGTGGTGCTCCGGCGGCAGGACAGAGCAACAATAACAATGGTTGGG
GACAACCCCAGCAGCCTCAGGCTCCGCAGGGGGGTAACAACAACCAGTTCAGCGGGGGGGCGCAGTCACGTCCTCAACAG
AGCAGCGCACCAGCAAATAACGAACCACCGATGGATTTTGATGACGATATTCCCTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A443IG73

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

71.739

100

0.737
  ssb Glaesserella parasuis strain SC1401

57.065

100

0.587
  ssb Neisseria meningitidis MC58

45.604

100

0.464
  ssb Neisseria gonorrhoeae MS11

45.604

100

0.464
  ssbA Bacillus subtilis subsp. subtilis str. 168

37.363

100

0.38