Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   J1C59_RS17550 Genome accession   NZ_CP071405
Coordinates   3732322..3732852 (-) Length   176 a.a.
NCBI ID   WP_128084967.1    Uniprot ID   A0A506QQC9
Organism   Pantoea deleyi strain LMG24200     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3727322..3737852
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J1C59_RS17535 - 3728882..3729277 (+) 396 WP_128086675.1 transposase -
  J1C59_RS17540 - 3730201..3731160 (-) 960 WP_128086674.1 DMT family transporter -
  J1C59_RS17545 - 3731237..3732064 (-) 828 WP_140916826.1 AraC family transcriptional regulator -
  J1C59_RS17550 ssb 3732322..3732852 (-) 531 WP_128084967.1 single-stranded DNA-binding protein SSB1 Machinery gene
  J1C59_RS17555 uvrA 3733077..3735905 (+) 2829 WP_128084966.1 excinuclease ABC subunit UvrA -
  J1C59_RS17560 - 3736136..3737200 (+) 1065 WP_128084965.1 NAD(P)-dependent alcohol dehydrogenase -
  J1C59_RS17565 - 3737252..3737575 (-) 324 WP_111140206.1 MmcQ/YjbR family DNA-binding protein -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 19202.07 Da        Isoelectric Point: 5.2456

>NTDB_id=545254 J1C59_RS17550 WP_128084967.1 3732322..3732852(-) (ssb) [Pantoea deleyi strain LMG24200]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGENKEITEWHRVVLFGKLAEVAGEYLKKGSQVYI
EGQLRTRKWQDQGGQERYTTEVVVNVGGTMQMLGGRQQGGNGGGNNNGWGQPQQPQGNNNQFSGGAQSRPQQQQPQSAPA
SNNNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=545254 J1C59_RS17550 WP_128084967.1 3732322..3732852(-) (ssb) [Pantoea deleyi strain LMG24200]
ATGGCCAGTCGTGGCGTTAACAAAGTGATTCTTGTCGGGAATCTGGGTCAGGATCCGGAAGTACGTTATATGCCCAATGG
CGGCGCGGTTGCGAACATTACGCTGGCGACGTCTGAGAGCTGGCGTGACAAGCAGACCGGTGAAAACAAAGAGATCACCG
AGTGGCACCGTGTGGTGCTGTTTGGCAAGCTGGCCGAAGTCGCGGGCGAATACCTGAAAAAGGGATCGCAGGTTTACATC
GAAGGCCAGCTGCGTACCCGTAAATGGCAGGATCAGGGTGGCCAGGAGCGTTACACCACAGAAGTGGTCGTGAACGTCGG
TGGCACCATGCAGATGCTGGGTGGCCGTCAGCAGGGCGGCAACGGCGGTGGCAACAACAACGGCTGGGGTCAGCCGCAGC
AGCCGCAGGGCAACAACAACCAGTTCAGCGGCGGCGCGCAGTCCCGTCCGCAGCAGCAGCAGCCACAGAGTGCGCCTGCC
AGCAACAACAATGAACCGCCAATGGATTTCGACGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A506QQC9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

70.43

100

0.744
  ssb Glaesserella parasuis strain SC1401

58.378

100

0.614
  ssb Neisseria meningitidis MC58

46.961

100

0.483
  ssb Neisseria gonorrhoeae MS11

46.961

100

0.483
  ssbA Bacillus subtilis subsp. subtilis str. 168

37.288

100

0.375