Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   JZ655_RS20435 Genome accession   NZ_CP071383
Coordinates   4209831..4211351 (+) Length   506 a.a.
NCBI ID   WP_207292618.1    Uniprot ID   -
Organism   Leclercia pneumoniae strain 49125     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4204831..4216351
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JZ655_RS20415 (JZ655_20415) - 4206399..4207328 (-) 930 WP_040078063.1 branched-chain amino acid transaminase -
  JZ655_RS20420 (JZ655_20420) ilvM 4207346..4207609 (-) 264 WP_040078062.1 acetolactate synthase 2 small subunit -
  JZ655_RS20425 (JZ655_20425) ilvG 4207606..4209252 (-) 1647 WP_207292617.1 acetolactate synthase 2 catalytic subunit -
  JZ655_RS20430 (JZ655_20430) ilvL 4209392..4209490 (-) 99 WP_040090233.1 ilv operon leader peptide -
  JZ655_RS20435 (JZ655_20435) comM 4209831..4211351 (+) 1521 WP_207292618.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  JZ655_RS20440 (JZ655_20440) - 4211376..4211714 (-) 339 WP_040078058.1 DUF413 domain-containing protein -
  JZ655_RS20445 (JZ655_20445) hdfR 4211803..4212654 (+) 852 WP_172657828.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55045.35 Da        Isoelectric Point: 8.2737

>NTDB_id=545151 JZ655_RS20435 WP_207292618.1 4209831..4211351(+) (comM) [Leclercia pneumoniae strain 49125]
MSLSVVYTRAALGVKAPLISVEVHLSNGLPGLTLVGLSETTVKEARDRVRSAIINSGYTFPAKKITINLAPADLPKEGGR
YDLPIAIALLTASEQLSASRLGHYEFVGELALTGALRGVPGAISGAIAALNAGREIIVATDNAAEVSLIEQKGCLVAGHL
QEVCAFLEGKHQLAEPEPVPFSTEPESNDINDIIGQEHGKRALEITAAGSHNLLLIGPPGTGKTMLASRLNGLLPPLSNH
EALESAAIISLVNASSLHKQWRKRPFRAPHHSASLAAMVGGGSIPAPGEISLAHNGILFLDELPEFERRVLDALREPIES
GQINISRTRAKIAYPARFQLIAAMNPSPTGHYQGQHNRCTPEQTLRYLSRLSGPFLDRFDLSLEIPLPPPGLLCQMQKTG
EDSATVRKRVMAAQGTQMARQNKLNAHLDNAEIRRFCQLEAEDAKWLEETLTRFGLSVRAWQRLLKVARTIADLEKCLNI
ERRHLQEALGYRAIDRLLQHLQKMLT

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=545151 JZ655_RS20435 WP_207292618.1 4209831..4211351(+) (comM) [Leclercia pneumoniae strain 49125]
ATGTCATTGTCGGTTGTTTACACGCGTGCGGCGTTAGGGGTAAAAGCGCCGCTCATTTCTGTTGAAGTGCATCTGAGTAA
TGGGCTTCCGGGGCTGACCCTGGTGGGTCTATCGGAAACCACCGTTAAGGAGGCCAGAGACCGGGTACGCAGCGCGATTA
TCAACAGCGGTTATACCTTTCCGGCAAAGAAAATCACCATCAACCTCGCCCCTGCGGATTTACCTAAAGAGGGAGGGCGA
TACGATTTACCTATCGCTATTGCGCTTCTCACTGCGTCTGAGCAGCTCTCTGCATCACGTCTGGGTCATTACGAGTTTGT
GGGTGAACTGGCCCTTACAGGCGCGTTGAGAGGGGTTCCAGGTGCAATATCCGGTGCAATCGCAGCGCTGAATGCTGGTC
GGGAGATCATCGTCGCTACCGATAATGCAGCAGAAGTCAGTCTTATCGAGCAGAAAGGCTGCCTGGTCGCGGGGCATTTA
CAGGAGGTCTGCGCCTTCCTGGAAGGGAAACATCAGCTGGCCGAGCCCGAGCCGGTCCCCTTTTCCACCGAGCCTGAATC
AAATGATATCAATGATATTATTGGCCAGGAGCATGGCAAGCGCGCCCTCGAGATCACCGCGGCTGGCTCGCATAATCTCT
TGCTCATTGGTCCTCCGGGTACAGGAAAGACCATGCTTGCCAGTCGGCTGAATGGACTGTTACCGCCGCTGAGTAATCAT
GAAGCTCTGGAAAGCGCAGCGATTATTAGCCTCGTCAATGCCAGCTCTCTGCATAAACAGTGGCGTAAGCGCCCGTTCCG
CGCACCACATCATAGCGCCTCGCTGGCGGCCATGGTGGGAGGTGGTTCTATTCCGGCTCCCGGCGAGATCTCGCTGGCCC
ATAATGGCATTCTTTTTCTGGATGAGCTGCCAGAGTTTGAGCGACGGGTGCTTGATGCTCTGCGAGAGCCTATTGAGTCA
GGGCAGATCAATATCTCCCGCACGCGCGCAAAGATAGCGTATCCGGCCCGTTTTCAGCTGATTGCAGCGATGAATCCCAG
TCCGACAGGACACTATCAGGGTCAACACAATCGCTGCACGCCAGAGCAGACGTTGCGCTATCTGTCGCGGCTGTCCGGCC
CTTTTCTCGACAGGTTTGATTTATCTCTGGAGATCCCTCTGCCGCCGCCAGGGCTGCTTTGCCAGATGCAGAAAACGGGA
GAGGACAGCGCGACCGTGCGGAAAAGGGTCATGGCGGCACAGGGCACGCAAATGGCGCGGCAAAACAAACTCAACGCCCA
TCTTGATAACGCCGAGATACGCCGGTTTTGTCAGCTGGAAGCAGAAGATGCAAAATGGCTGGAGGAGACGCTTACTCGCT
TCGGTCTTTCCGTTCGGGCCTGGCAGCGCCTGCTGAAGGTCGCACGCACGATTGCCGATCTGGAGAAATGTTTGAATATT
GAACGAAGGCATCTGCAGGAAGCGCTGGGCTATCGTGCCATCGACAGGTTATTACAGCACTTACAAAAGATGCTGACCTA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

60.392

100

0.609
  comM Glaesserella parasuis strain SC1401

59.454

100

0.603
  comM Vibrio campbellii strain DS40M4

58.367

99.209

0.579
  comM Vibrio cholerae strain A1552

57.968

99.209

0.575
  comM Legionella pneumophila str. Paris

49.597

98.024

0.486
  comM Legionella pneumophila strain ERS1305867

49.597

98.024

0.486
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.829

100

0.431