Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   JZ655_RS18440 Genome accession   NZ_CP071383
Coordinates   3797850..3799283 (+) Length   477 a.a.
NCBI ID   WP_207292472.1    Uniprot ID   -
Organism   Leclercia pneumoniae strain 49125     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3792850..3804283
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JZ655_RS18410 (JZ655_18410) - 3793416..3794393 (+) 978 WP_040073875.1 calcium/sodium antiporter -
  JZ655_RS18415 (JZ655_18415) kdsD 3794407..3795393 (+) 987 WP_046885778.1 arabinose-5-phosphate isomerase KdsD -
  JZ655_RS18420 (JZ655_18420) kdsC 3795408..3795974 (+) 567 WP_207293878.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  JZ655_RS18425 (JZ655_18425) lptC 3795971..3796546 (+) 576 WP_040073872.1 LPS export ABC transporter periplasmic protein LptC -
  JZ655_RS18430 (JZ655_18430) lptA 3796515..3797069 (+) 555 WP_040073871.1 lipopolysaccharide ABC transporter substrate-binding protein LptA -
  JZ655_RS18435 (JZ655_18435) lptB 3797076..3797801 (+) 726 WP_040073870.1 LPS export ABC transporter ATP-binding protein -
  JZ655_RS18440 (JZ655_18440) rpoN/rpoN1 3797850..3799283 (+) 1434 WP_207292472.1 RNA polymerase factor sigma-54 Machinery gene
  JZ655_RS18445 (JZ655_18445) hpf 3799306..3799593 (+) 288 WP_010436063.1 ribosome hibernation promoting factor -
  JZ655_RS18450 (JZ655_18450) ptsN 3799676..3800167 (+) 492 WP_040073868.1 PTS IIA-like nitrogen regulatory protein PtsN -
  JZ655_RS18455 (JZ655_18455) rapZ 3800213..3801067 (+) 855 WP_040073867.1 RNase adapter RapZ -
  JZ655_RS18460 (JZ655_18460) npr 3801064..3801336 (+) 273 WP_040073866.1 PTS phosphocarrier protein NPr -
  JZ655_RS18465 (JZ655_18465) mtgA 3801333..3802031 (-) 699 WP_242637320.1 monofunctional biosynthetic peptidoglycan transglycosylase -
  JZ655_RS18470 (JZ655_18470) elbB 3802040..3802693 (-) 654 WP_207293879.1 isoprenoid biosynthesis glyoxalase ElbB -

Sequence

Protein


Download         Length: 477 a.a.        Molecular weight: 54057.93 Da        Isoelectric Point: 4.3696

>NTDB_id=545148 JZ655_RS18440 WP_207292472.1 3797850..3799283(+) (rpoN/rpoN1) [Leclercia pneumoniae strain 49125]
MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQELQQALESNPLLEQTDLHDEVDTQQSQDTEALDTADALEQKEMPD
ELPLDVSWDEIYTAGTPSGNRVDYQDDELPVYQGETTQSLQDYLMWQVELTPFSDTDRAIATSIVDAVDDTGYLTVTLED
ILESIGDADIDLEEVEAVLKRVQRFDPIGVAARDLRDCLLIQLSQFVKETPWIEEARLIVSDHLDLLANHDFRALMRVTR
LKEDVLKAAVNLIQSLDPRPGQSIQTSEPEYVIPDVLVRKHNGLWTVELNSDSIPRLQINQQYASMCTSSRNDSDNQFIR
SNLQEARWLIKSLESRNDTLLRVSRCIVEQQQAFFERGEEYMKPMVLADIAQAVEMHESTISRVTTQKYLHSPRGIFELK
YFFSSHVNTEGGGEASSTAIRALVKKLIAAENPAKPLSDSKLTTMLSDQGIMVARRTVAKYRESLSIPPSNQRKQLV

Nucleotide


Download         Length: 1434 bp        

>NTDB_id=545148 JZ655_RS18440 WP_207292472.1 3797850..3799283(+) (rpoN/rpoN1) [Leclercia pneumoniae strain 49125]
ATGAAGCAAGGTTTGCAATTAAGGCTCAGCCAGCAGCTGGCAATGACGCCACAATTACAGCAGGCAATCCGCCTGTTGCA
ATTGTCTACGCTTGAACTGCAGCAGGAGCTCCAGCAAGCGCTGGAGAGCAATCCTCTGCTTGAGCAAACCGATCTTCACG
ATGAGGTAGACACCCAGCAGTCCCAGGACACCGAGGCACTTGATACCGCCGATGCCCTTGAGCAGAAAGAGATGCCCGAC
GAGCTGCCGCTGGATGTCAGCTGGGATGAGATCTACACCGCCGGCACCCCTTCCGGTAACCGCGTGGATTACCAGGACGA
TGAACTGCCGGTTTATCAGGGGGAAACGACCCAGTCACTGCAGGATTATCTGATGTGGCAGGTGGAGCTGACCCCGTTCT
CCGATACCGATCGCGCCATCGCCACCTCTATCGTCGATGCTGTTGATGACACCGGTTATCTCACCGTAACGCTGGAAGAT
ATTCTTGAAAGCATTGGCGATGCCGATATCGATCTGGAAGAGGTCGAAGCGGTTCTGAAGCGAGTTCAGCGCTTTGATCC
CATTGGCGTAGCGGCGAGAGATTTACGTGACTGCCTGCTTATACAGCTGTCGCAGTTTGTGAAAGAGACGCCCTGGATCG
AAGAGGCCAGACTGATCGTCAGCGATCATCTGGATCTACTGGCAAATCATGACTTCCGGGCCTTAATGCGGGTGACGCGG
CTAAAAGAAGATGTGCTCAAGGCCGCCGTGAATCTGATTCAGTCACTGGATCCCCGTCCGGGTCAGTCGATCCAGACCAG
CGAGCCCGAGTATGTTATCCCCGACGTGCTGGTGCGAAAACATAACGGTCTGTGGACCGTAGAACTTAACTCCGACAGCA
TTCCCCGCCTGCAAATTAACCAGCAATACGCCTCAATGTGCACCAGCTCGCGCAACGATTCCGATAACCAGTTTATTCGC
AGTAATCTGCAGGAAGCGCGCTGGCTGATTAAAAGCCTTGAGAGCCGTAACGATACCCTGCTGCGCGTCAGCCGCTGTAT
CGTCGAGCAACAGCAGGCCTTTTTCGAACGGGGCGAAGAGTACATGAAACCGATGGTGCTGGCGGATATCGCCCAGGCCG
TCGAAATGCACGAATCCACGATTTCCCGCGTCACTACGCAGAAGTATCTGCATAGCCCACGCGGTATTTTTGAGCTTAAG
TATTTCTTCTCTAGCCATGTTAATACCGAGGGCGGCGGCGAAGCATCGTCGACAGCCATCCGTGCGCTGGTGAAGAAATT
GATCGCCGCGGAAAACCCCGCGAAACCACTGAGTGACAGTAAGTTAACCACCATGCTGTCGGATCAAGGTATCATGGTGG
CTCGCCGCACTGTTGCGAAGTATCGAGAGTCTTTATCCATTCCGCCGTCTAACCAGCGTAAGCAGCTGGTCTGA

Domains

Predicted by InterproScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-303)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(317-475)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.347

100

0.48