Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JZ655_RS01320 Genome accession   NZ_CP071383
Coordinates   285821..286351 (+) Length   176 a.a.
NCBI ID   WP_006177466.1    Uniprot ID   A0AAE4E8Q4
Organism   Leclercia pneumoniae strain 49125     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 280821..291351
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JZ655_RS01300 (JZ655_01300) aphA 281133..281846 (+) 714 WP_040077604.1 acid phosphatase AphA -
  JZ655_RS01305 (JZ655_01305) - 281975..282391 (+) 417 WP_040077603.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  JZ655_RS01310 (JZ655_01310) - 282394..282747 (+) 354 WP_046885533.1 MmcQ/YjbR family DNA-binding protein -
  JZ655_RS01315 (JZ655_01315) uvrA 282751..285573 (-) 2823 WP_040077600.1 excinuclease ABC subunit UvrA -
  JZ655_RS01320 (JZ655_01320) ssb 285821..286351 (+) 531 WP_006177466.1 single-stranded DNA-binding protein SSB1 Machinery gene
  JZ655_RS01325 (JZ655_01325) - 286422..286703 (-) 282 WP_207292810.1 YjcB family protein -
  JZ655_RS21305 - 287250..287510 (+) 261 WP_242637290.1 hypothetical protein -
  JZ655_RS01330 (JZ655_01330) - 287503..288612 (+) 1110 WP_242637291.1 sensor domain-containing diguanylate cyclase -
  JZ655_RS01335 (JZ655_01335) - 288999..290540 (+) 1542 WP_207292811.1 EAL domain-containing protein -
  JZ655_RS01340 (JZ655_01340) soxS 290533..290859 (-) 327 WP_040077595.1 superoxide response transcriptional regulator SoxS -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18835.84 Da        Isoelectric Point: 5.2456

>NTDB_id=545132 JZ655_RS01320 WP_006177466.1 285821..286351(+) (ssb) [Leclercia pneumoniae strain 49125]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGAEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQNQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAP
APSNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=545132 JZ655_RS01320 WP_006177466.1 285821..286351(+) (ssb) [Leclercia pneumoniae strain 49125]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGTGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAGATGAAAGAGCAGACCG
AATGGCACCGTGTCGTGCTGTTTGGCAAGCTGGCAGAAGTGGCCGGCGAATATCTGCGTAAAGGTTCTCAGGTCTACATC
GAAGGCCAGCTGCGTACCCGCAAATGGACCGATCAGTCCGGCGCAGAAAAATACACCACTGAAGTGGTGGTGAACGTGGG
CGGCACCATGCAGATGCTGGGTGGCCGTCAGGGCGGCGGCGCACCGGCGGGTGGCGGTCAGAACCAGCAGCAGGGCGGTT
GGGGTCAGCCTCAGCAGCCGCAGGGCGGAAACCAGTTCAGCGGCGGCGCACAGTCCCGTCCGCAGCAGCAATCTGCTCCG
GCACCGTCCAACGAACCGCCAATGGATTTTGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.667

100

0.784
  ssb Glaesserella parasuis strain SC1401

56.216

100

0.591
  ssb Neisseria meningitidis MC58

46.629

100

0.472
  ssb Neisseria gonorrhoeae MS11

46.629

100

0.472
  ssbA Bacillus subtilis subsp. subtilis str. 168

35.556

100

0.364