Detailed information    

insolico Bioinformatically predicted

Overview

Name   ciaR   Type   Regulator
Locus tag   LO002_RS15575 Genome accession   NZ_CP087321
Coordinates   3232442..3232684 (-) Length   80 a.a.
NCBI ID   WP_374045762.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain OC043     
Function   repress competence development; post-transcriptional repression of CSP production (predicted from homology)   
Competence regulation

Genomic Context

Location: 3227442..3237684
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO002_RS15550 - 3227891..3229078 (+) 1188 WP_002001094.1 ammonium transporter -
  LO002_RS15555 - 3229231..3229929 (+) 699 WP_000184466.1 phosphatase PAP2 family protein -
  LO002_RS15560 - 3229930..3231264 (-) 1335 WP_000559382.1 two-component system sensor histidine kinase PmrB -
  LO002_RS15565 - 3231290..3231739 (-) 450 Protein_3044 winged helix-turn-helix domain-containing protein -
  LO002_RS15570 - 3231759..3232418 (-) 660 WP_000782406.1 IS1595-like element ISAba36 family transposase -
  LO002_RS15575 ciaR 3232442..3232684 (-) 243 WP_374045762.1 response regulator transcription factor Regulator
  LO002_RS15580 - 3232699..3234348 (-) 1650 WP_002017062.1 phosphoethanolamine transferase -
  LO002_RS15585 - 3234532..3235836 (-) 1305 WP_000362914.1 DcaP family trimeric outer membrane transporter -
  LO002_RS15590 - 3236382..3237629 (-) 1248 WP_000489706.1 MFS transporter -

Sequence

Protein


Download         Length: 80 a.a.        Molecular weight: 9093.85 Da        Isoelectric Point: 4.3806

>NTDB_id=545120 LO002_RS15575 WP_374045762.1 3232442..3232684(-) (ciaR) [Acinetobacter baumannii strain OC043]
MTKILMIEDDFMIAESTITLLQYHQFEVEWVNNGLDGLAQLAKTKFDLILLDLGLPMMDGMQVLKQIRQRAATPVLIMGL

Nucleotide


Download         Length: 243 bp        

>NTDB_id=545120 LO002_RS15575 WP_374045762.1 3232442..3232684(-) (ciaR) [Acinetobacter baumannii strain OC043]
ATGACAAAAATCTTGATGATTGAAGATGATTTTATGATTGCAGAATCAACGATCACGTTGCTGCAATATCATCAATTTGA
GGTGGAATGGGTCAATAACGGTTTAGATGGTTTGGCTCAGTTGGCGAAGACTAAATTTGATCTTATTCTTTTGGATTTAG
GATTGCCTATGATGGATGGTATGCAAGTTTTAAAGCAGATCCGTCAAAGAGCAGCAACACCAGTATTAATTATGGGGCTG
TAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaR Streptococcus pneumoniae R6

44.304

98.75

0.438
  ciaR Streptococcus pneumoniae Rx1

44.304

98.75

0.438
  ciaR Streptococcus pneumoniae D39

44.304

98.75

0.438
  ciaR Streptococcus pneumoniae TIGR4

44.304

98.75

0.438
  ciaR Streptococcus mutans UA159

43.038

98.75

0.425
  covR Streptococcus salivarius strain HSISS4

38.158

95

0.363
  covR Lactococcus lactis subsp. lactis strain DGCC12653

38.158

95

0.363