Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   FH974_RS15800 Genome accession   NZ_CP071325
Coordinates   3482037..3483566 (-) Length   509 a.a.
NCBI ID   WP_047887481.1    Uniprot ID   A0A0J1JRY1
Organism   Photobacterium ganghwense strain C2.2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3477037..3488566
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FH974_RS15775 (FH974_15775) - 3477910..3478083 (+) 174 WP_157038331.1 hypothetical protein -
  FH974_RS15780 (FH974_15780) - 3478217..3478483 (+) 267 WP_047887477.1 YihD family protein -
  FH974_RS15785 (FH974_15785) ccoG 3478761..3480182 (+) 1422 WP_047887478.1 cytochrome c oxidase accessory protein CcoG -
  FH974_RS15790 (FH974_15790) - 3480292..3481281 (+) 990 WP_047887479.1 serine/threonine protein kinase -
  FH974_RS15795 (FH974_15795) - 3481353..3481955 (+) 603 WP_047887480.1 thiol:disulfide interchange protein DsbA/DsbL -
  FH974_RS15800 (FH974_15800) comM 3482037..3483566 (-) 1530 WP_047887481.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  FH974_RS15805 (FH974_15805) ilvG 3483973..3485619 (+) 1647 WP_047887482.1 acetolactate synthase 2 catalytic subunit -
  FH974_RS15810 (FH974_15810) ilvM 3485619..3485867 (+) 249 WP_047887483.1 acetolactate synthase 2 small subunit -
  FH974_RS15815 (FH974_15815) ilvE 3485888..3486823 (+) 936 WP_047887484.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 509 a.a.        Molecular weight: 54289.47 Da        Isoelectric Point: 7.7088

>NTDB_id=545070 FH974_RS15800 WP_047887481.1 3482037..3483566(-) (comM) [Photobacterium ganghwense strain C2.2]
MNLAIVHSRACVGVEAPPVTVEVHISNGMPALALVGLPETSVKEAKDRVRSAIVNAGFEFPSRRITVNLAPADLPKEGGR
FDLPIALGILAASGQIPDTSLQNTEFLGELALSGELRPVKGALPAALAAKQAGRCLVVPDQNGNQVALVGEALHKSAPSL
LAVCGHLCGQASLSLSCSAPHEDPPPSGVSRDMQDIIGQQQGKRALEIAAAGGHNLLFLGPPGTGKTMLASRLCDLLPDM
TVAEAMETAAVASLTQQSIHEGNWRRRPFRTPHHSSSMAALVGGGSVPRPGEISLAHNGILFLDEMPEFERKVLDSLREP
LESGEIVISRATSKMTFPARFQLIGALNPSPTGYYEGSQARTNPQAILRYLGRLSGPLLDRFDMSIEIPALPRGTLADGG
DRGEPSVVIRQRVAQARDIMQGRAGRVNALLSTRELDKYCALDKPDAEFLETALHQLGLSIRAYHRIIKVARTIADLAGC
ERISRAHLAEALGYRAMDRLLKQLSAQMV

Nucleotide


Download         Length: 1530 bp        

>NTDB_id=545070 FH974_RS15800 WP_047887481.1 3482037..3483566(-) (comM) [Photobacterium ganghwense strain C2.2]
ATGAACCTTGCTATTGTCCATAGTCGAGCGTGTGTGGGAGTGGAAGCGCCGCCGGTGACGGTGGAAGTCCATATCAGTAA
CGGAATGCCGGCACTGGCACTGGTGGGGTTGCCGGAAACCAGTGTGAAAGAGGCCAAGGATCGGGTCCGCAGTGCGATTG
TCAACGCCGGGTTTGAGTTCCCGTCCCGGCGGATCACGGTCAATCTGGCACCGGCGGATTTACCCAAGGAAGGCGGACGG
TTTGACCTGCCGATTGCGTTGGGGATACTCGCCGCTTCCGGCCAAATCCCTGATACATCACTGCAAAATACCGAGTTTTT
GGGGGAGTTAGCCCTGTCGGGGGAGCTGCGTCCGGTCAAGGGAGCGTTGCCTGCGGCGCTCGCGGCCAAGCAGGCCGGAC
GGTGCCTGGTCGTCCCGGATCAGAACGGCAATCAGGTGGCGCTGGTGGGGGAGGCTCTCCACAAATCGGCCCCGTCCTTG
CTGGCGGTATGTGGCCATTTGTGCGGACAGGCTAGCCTCTCGCTCAGCTGTTCGGCCCCGCATGAAGACCCGCCACCGAG
TGGCGTGTCCCGCGACATGCAGGACATCATTGGTCAGCAGCAAGGGAAACGGGCGCTGGAAATTGCCGCGGCCGGCGGGC
ACAACCTGCTCTTTTTGGGGCCGCCCGGAACCGGAAAAACCATGCTTGCGTCACGATTGTGCGATCTGTTGCCCGACATG
ACGGTCGCGGAAGCCATGGAAACAGCGGCCGTGGCGTCGCTGACTCAACAGAGCATTCACGAAGGCAACTGGCGGCGTCG
GCCTTTCAGGACACCGCACCATTCCAGCTCGATGGCGGCGCTGGTGGGCGGGGGCTCGGTGCCCCGGCCGGGGGAAATTT
CCCTGGCGCATAACGGGATCCTGTTTTTGGATGAAATGCCGGAATTTGAACGTAAAGTGCTGGATTCTTTACGTGAACCG
CTGGAATCCGGCGAGATTGTGATCTCCCGAGCCACCAGCAAAATGACGTTTCCGGCTCGCTTTCAGCTGATTGGGGCATT
AAATCCCAGCCCGACCGGCTACTACGAAGGCAGTCAGGCACGCACCAACCCGCAGGCGATCTTGCGCTATCTGGGGCGGC
TGTCTGGCCCGTTGCTGGATCGTTTCGATATGTCGATTGAGATCCCGGCCCTGCCGCGCGGCACACTGGCGGATGGGGGC
GATCGGGGGGAGCCGAGTGTGGTGATCCGCCAACGGGTGGCGCAGGCGCGGGATATCATGCAAGGGCGTGCCGGACGGGT
GAATGCCCTGCTTTCGACTCGGGAGCTGGACAAGTATTGCGCGCTGGATAAGCCGGATGCGGAGTTTCTGGAAACCGCCT
TGCACCAGCTTGGTTTATCGATTCGGGCCTATCACCGTATTATCAAGGTGGCGCGCACCATTGCTGATTTAGCCGGGTGT
GAGCGGATCAGCCGAGCTCATCTGGCGGAAGCGCTCGGTTACCGGGCGATGGATCGGTTATTGAAACAGTTGTCAGCTCA
AATGGTTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-495)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(192-393)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J1JRY1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

77.407

100

0.774
  comM Vibrio campbellii strain DS40M4

76.621

100

0.766
  comM Glaesserella parasuis strain SC1401

63.405

100

0.637
  comM Haemophilus influenzae Rd KW20

62.525

99.607

0.623
  comM Legionella pneumophila str. Paris

49.598

97.839

0.485
  comM Legionella pneumophila strain ERS1305867

49.598

97.839

0.485
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.874

99.411

0.436